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betaPrior
•
reset
1
vote
8
replies
3.8k
views
DESeq2: betaPrior changes significance dramatically
deseq2
betaPrior
shrinkage
significance
6.0 years ago
brynedal
▴ 40
0
votes
7
replies
1.3k
views
Highly differentially expressed genes not found with DESeq2 and default betaPrior
deseq2
betaprior
updated 7.7 years ago by
thomas.siegmund
• 0 • written 7.7 years ago by
akaever
▴ 30
0
votes
6
replies
1.5k
views
large range of LFC in DESeq2
deseq2
lfc
betaprior
updated 18 months ago by
Michael Love
41k • written 5.4 years ago by
Mariaxi
• 0
5
votes
4
replies
2.1k
views
lfcShrink behavior with homogeneous expression dataset
deseq2
lfcshrink
betaprior
updated 5.8 years ago by
Michael Love
41k • written 5.8 years ago by
mat.lesche
▴ 90
1
vote
3
replies
1.1k
views
DESEq2: the use of interaction term and grouping with different betaPrior arguments in older version of DESEq2
deseq2
interaction term
multiple groups
betaprior
updated 6.0 years ago by
Michael Love
41k • written 6.0 years ago by
tarun2
• 0
2
votes
1
reply
1.3k
views
LRT test with or without betaPrior
deseq2
LRT
betaprior
updated 7.6 years ago by
Michael Love
41k • written 7.6 years ago by
laianavarromartin
▴ 20
6 results • Page
1 of 1
Recent ...
Replies
Comment: Once again a "Model matrix not full rank"
by
James W. MacDonald
65k
In that case both time and treatment are identical things, so choose one and go with it.
Comment: Once again a "Model matrix not full rank"
by
arfranco
▴ 130
numbers 1 to 3 represent observations and/or replicates Control is control. The three controls are shown as Control_1, control_2 and Contr…
Answer: Once again a "Model matrix not full rank"
by
James W. MacDonald
65k
The time and treatment are essentially the same thing, so you cannot have both in the model at the same time. Do the numbers 1:3 represent …
Answer: DESeq2 v1.35.0
by
Michael Love
41k
That is not a release (odd 'y' digit). See Bioconductor help pages: https://contributions.bioconductor.org/description.html#description-ver…
Comment: Although I successfully installed the package "simpleaffy'' , I cannot library i
by
James W. MacDonald
65k
Please don't piggyback on posts from 2.3 years ago. If you have a question, post as a new question.
Votes
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
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