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lfc
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7
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2.3k
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LRT test followed by filtering based on LFC
deseq2
LFC
LRT
written 7.0 years ago by
sally.badawi
• 0
1
vote
1
reply
1.4k
views
Gene wise dispersion estimate Process - From the prior to the posterior
GLM
prior
DESeq
LFC
updated 3.7 years ago by
Michael Love
43k • written 3.7 years ago by
stew
• 0
0
votes
1
reply
1.8k
views
Filtering DESeq2 results for | LFC | > 1 genes
RNAseq
LFC
DEseq
4.7 years ago
ayy2110
• 0
0
votes
6
replies
2.6k
views
large range of LFC in DESeq2
deseq2
lfc
betaprior
updated 3.3 years ago by
Michael Love
43k • written 7.2 years ago by
Mariaxi
• 0
17
votes
7
replies
16k
views
DESeq2 lfcShrink() usage of coef vs. usage of contrast
deseq2
lfc
coef
contrast
updated 8.6 years ago by
Michael Love
43k • written 8.6 years ago by
Anke Busch
▴ 10
6
votes
4
replies
3.7k
views
Identification of DEGs through limma analysis
limma
microarray
DEGs
p values
lfc
8.7 years ago
rkp
• 0
4
votes
14
replies
23k
views
standard error value (lfcSE) returned by DeSeq2
deseq2
deseq
lfc
lfcse
standard error
updated 8.9 years ago by
rraadd_8
• 0 • written 9.0 years ago by
tootiki
• 0
2
votes
1
reply
3.1k
views
Using Limma to identify any differences between multiple treatment groups (without making pairwise comparisons)
microarray
limma
multiple treatments
lfc
updated 9.8 years ago by
Aaron Lun
★ 29k • written 9.8 years ago by
brionyk9
• 0
8 results • Page
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Comment: Question on processing compound protein groups in limpa
by
JKim
• 0
Many thanks. I appreciate your advice.
Answer: Question on processing compound protein groups in limpa
by
Gordon Smyth
53k
Different people have different ways of dealing with compound protein groups. You could just leave them in the analysis, in which case limp…
Answer: Correct usage of limpa for protein input
by
Gordon Smyth
53k
limpa can work on protein-level quantifications, but they must be intensity-based and must be on the log scale. From what I read (<https://…
Comment: A problem occurs when running the monocle2
by
a2a2hset32aa
• 0
Troubleshooting monocle2 errors in R 4.5.1 often points to package incompatibilities, particularly with newer versions of igraph. For resea…
Comment: Deadline Extended: EuroBioC2026 Call for Abstracts
by
a2a2hset32aa
• 0
Attending EuroBioC2026 is an excellent way for researchers to explore the intersection of technology and biology. For those seeking high qu…
Votes
Answer: Question on processing compound protein groups in limpa
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
A: Interpretaion of dendrogram height in WGCNA?
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