Bioconductor Lfc

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1.8k

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deseq2 LFC LRT

written 5.8 years ago by sally.badawi • 0

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979

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GLM prior DESeq LFC

updated 2.5 years ago by Michael Love 43k • written 2.5 years ago by stew • 0

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1.3k

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RNAseq LFC DEseq

3.5 years ago ayy2110 • 0

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1.9k

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deseq2 lfc betaprior

updated 2.1 years ago by Michael Love 43k • written 6.0 years ago by Mariaxi • 0

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14k

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deseq2 lfc coef contrast

updated 7.3 years ago by Michael Love 43k • written 7.3 years ago by Anke Busch ▴ 10

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3.0k

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limma microarray DEGs p values lfc

7.5 years ago • updated 7.4 years ago rkp • 0

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20k

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deseq2 deseq lfc lfcse standard error

updated 7.7 years ago by rraadd_8 • 0 • written 7.7 years ago by tootiki • 0

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2.5k

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microarray limma multiple treatments lfc

updated 8.6 years ago by Aaron Lun ★ 28k • written 8.6 years ago by brionyk9 • 0

8 results • Page 1 of 1

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Comment: contrast matrix design for a continuous variable by dtzhu337 • 0

Thank you, Gordon. X is time splines for time point, and yes, it's needed. However, I was also thinking to incorporate time point with se…

Answer: contrast matrix design for a continuous variable by Gordon Smyth 52k

Yes, the design and contrasts are correct. Your analysis is also adjusted for covariates defined by X, which I assume is what you want to …

Comment: fail to use addPerROIQC in Rmd by liu.n • 0

That's odd. So it can run successfully within markdown but would be failed when knitting?

Comment: fail to use addPerROIQC in Rmd by joseph.joonsang • 0

> dim(spe) [1] 19962 425

Comment: fail to use addPerROIQC in Rmd by liu.n • 0

Hi, what's the output from `dim(spe)`?

Votes

Answer: contrast matrix design for a continuous variable

A: What's the difference between p.adjust and qvalue?

Answer: DESeq2- merging technical vs biological replicates

Comment: What type of counts data to import for performing Isoform analysis in edgeR

Answer: What type of counts data to import for performing Isoform analysis in edgeR

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Popular Question to joseph.joonsang • 0

Popular Question to Hans-Ulrich Klein ▴ 330