Bioconductor Bioc2021

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Bioc2021 Conference

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Conference Bioc2021

updated 3.2 years ago by Levi Waldron ★ 1.1k • written 3.2 years ago by shepherl 3.9k

11 results • Page 1 of 1

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Comment: Help with running egsea() by James W. MacDonald 65k

Oh, right. Ideally you would use NCBI (aka Entrez gene) IDs because they are way more likely to be unique. Gene symbols are broken down int…

Comment: Help with running egsea() by Chris • 0

Thanks James! I update the question. The last question mean when we use `buildIdx()`, could we use gene symbol instead of entrezID. However…

Comment: Help with running egsea() by James W. MacDonald 65k

I don't understand the last question, but do look at the msigdb.gsets argument to `buildIdx` in the help page for that function.

Answer: Help with running egsea() by James W. MacDonald 65k

There are no arguments to `egsea.base`, as it is meant only as a helper function to return the different methods. In addition, if you are u…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

I am working with mouse data. I don't know how to do this, but I will go through it. Can you help me with the second question? how do we …

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Comment: Help with running egsea()

Answer: Trim/Filter out-of-bounds GRanges

Comment: Help with running egsea()

Answer: How to save the DEXSeq results

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Popular Question to Malcolm Cook ★ 1.6k

Teacher to Gordon Smyth 50k