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biostrings
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DNAString: Standard checksum function?
Biostrings
FASTA
sequencing
8.2 years ago • updated 13 days ago
Henrik Bengtsson
★ 2.4k
2
votes
6
replies
796
views
Biostrings error at retrieving protein sequences
SequenceMatching
Biostrings
DifferentialExpression
Proteome
updated 7 months ago by
Hervé Pagès
16k • written 7 months ago by
nromerov
• 0
1
vote
5
replies
458
views
Biostrings: read*StringSet() functions leave open file handles
Biostrings
10 weeks ago • updated 8 weeks ago
Gerhard Thallinger
▴ 180
3
votes
4
replies
275
views
Store output of matchPWM()
biostrings
Biostrings
17 days ago • updated 5 days ago
mat149
▴ 70
2
votes
2
replies
259
views
From a DNAStringSet to a data.frame
Biostrings
7 weeks ago
ramiro.barrantes
▴ 10
0
votes
1
reply
159
views
Trimming a section of a scaffold from a genome
Biostrings
GenomeAssembly
updated 7 weeks ago by
James W. MacDonald
65k • written 7 weeks ago by
Karen
• 0
1
vote
3
replies
553
views
AAbin vs DNAbin structures
Biostrings
updated 8 months ago by
James W. MacDonald
65k • written 8 months ago by
rogerb
• 0
0
votes
2
replies
721
views
Probe off-target prediction: Identifying short sequence matches - potentially with mismatches & indels - in a transcriptome
Microarray
Alignment
Biostrings
written 12 months ago by
sandmann.t
▴ 70
0
votes
0
replies
175
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How to search for a string in a DNAStringSet dataset?
Biostrings
4 months ago
Angela Michalichyn
• 0
9 results • Page
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Answer: Numerical differences in DESeq2 output depending on different design matrix cons
by
Michael Love
42k
Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.
Answer: DESeq2- Mysterious interaction suppresses DEGs
by
Michael Love
42k
Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
swbarnes2
★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Comment: DESeq2- Mysterious interaction suppresses DEGs
by
shaunpeterson
• 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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Vincent J. Carey, Jr.
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Koen Van den Berge
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