Showing : biostrings • reset
3
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Store output of matchPWM()
biostrings Biostrings
17 days ago • updated 5 days ago mat149 ▴ 70
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5
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2.9k
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DNAString: Standard checksum function?
Biostrings FASTA sequencing
8.2 years ago • updated 13 days ago Henrik Bengtsson ★ 2.4k
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159
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Trimming a section of a scaffold from a genome
Biostrings GenomeAssembly
updated 7 weeks ago by 65k • written 7 weeks ago by • 0
2
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2
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259
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From a DNAStringSet to a data.frame
Biostrings
7 weeks ago ramiro.barrantes ▴ 10
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5
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Biostrings: read*StringSet() functions leave open file handles
Biostrings
10 weeks ago • updated 8 weeks ago Gerhard Thallinger ▴ 180
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How to search for a string in a DNAStringSet dataset?
Biostrings
4 months ago Angela Michalichyn • 0
2
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6
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796
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Biostrings error at retrieving protein sequences
SequenceMatching Biostrings DifferentialExpression Proteome
updated 7 months ago by 16k • written 7 months ago by • 0
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3
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553
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AAbin vs DNAbin structures
Biostrings
updated 8 months ago by 65k • written 8 months ago by • 0
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721
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Probe off-target prediction: Identifying short sequence matches - potentially with mismatches & indels - in a transcriptome
Microarray Alignment Biostrings
written 12 months ago by ▴ 70
9 results • Page 1 of 1
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Answer: Numerical differences in DESeq2 output depending on different design matrix cons by Michael Love 42k
Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.
Answer: DESeq2- Mysterious interaction suppresses DEGs by Michael Love 42k
Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…
Comment: Ensembl plants at annotationHub? by Daniele • 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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