Bioconductor Biostrings

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273

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biostrings Biostrings

16 days ago • updated 4 days ago mat149 ▴ 70

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155

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Biostrings GenomeAssembly

updated 7 weeks ago by James W. MacDonald 65k • written 7 weeks ago by Karen • 0

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256

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Biostrings

7 weeks ago ramiro.barrantes ▴ 10

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458

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Biostrings

10 weeks ago • updated 8 weeks ago Gerhard Thallinger ▴ 180

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175

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Biostrings

4 months ago Angela Michalichyn • 0

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796

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SequenceMatching Biostrings DifferentialExpression Proteome

updated 7 months ago by Hervé Pagès 16k • written 7 months ago by nromerov • 0

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Biostrings

updated 8 months ago by James W. MacDonald 65k • written 8 months ago by rogerb • 0

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721

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Microarray Alignment Biostrings

written 12 months ago by sandmann.t ▴ 70

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2.9k

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Biostrings FASTA sequencing

8.2 years ago • updated 12 days ago Henrik Bengtsson ★ 2.4k

9 results • Page 1 of 1

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Answer: Numerical differences in DESeq2 output depending on different design matrix cons by Michael Love 42k

Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.

Answer: DESeq2- Mysterious interaction suppresses DEGs by Michael Love 42k

Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…

Comment: Numerical differences in DESeq2 output depending on different design matrix cons by JKim • 0

The 1st model has an interaction term, but the 2nd model doesn't have the interaction term. That makes the difference.

Comment: Ensembl plants at annotationHub? by Daniele • 0

Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!

Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k

If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?

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Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

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