Showing : cancer • reset
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Limma: design for a multiple level factor taking into account centre and plate
Microarray Cancer Microarray Cancer
15.1 years ago Daniel Brewer ★ 1.9k
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0
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1.3k
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Issues running affylmGUI
Cancer Breast affylmGUI Cancer Breast affylmGUI
15.1 years ago Lorenzo Melchor ▴ 50
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0
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748
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obtain a list of possible oncogenes from the annotation, packages?
Annotation Cancer Annotation Cancer
15.1 years ago Aedin Culhane ▴ 510
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0
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745
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Course: Intro to R / Bioc, December 9-10
Cancer Cancer
15.1 years ago Martin Morgan 25k
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0
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1.1k
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[R] Problems in running affylmGUI
Cancer Breast affylmGUI Cancer Breast affylmGUI
15.1 years ago James W. MacDonald 68k
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0
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613
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IRanges
Cancer IRanges Cancer IRanges
15.1 years ago Hervé Pagès 16k
1
vote
1
reply
1.4k
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IRanges: RangedData rbind error
Cancer Cancer
updated 15.1 years ago by ★ 11k • written 15.1 years ago by ▴ 130
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1
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1.1k
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beadarray, bash, hulk, excludeBrihtBeadNeighbors, et al -- how to use practically?
Cancer beadarray EBImage Cancer beadarray EBImage
updated 15.1 years ago by ▴ 60 • written 15.2 years ago by ★ 1.1k
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0
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1.5k
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qPCR Event Calendar - winter 2010
SNP qPCR Genetics Normalization Clustering Regression Cancer Breast Xenopus laevis probe
15.2 years ago qPCR Platform - the reference in real-t… ▴ 170
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6
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1.9k
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Best way to get updated annotation for BACs
Microarray Annotation Cancer BAC Microarray Annotation Cancer BAC
updated 15.2 years ago by 21k • written 15.2 years ago by ★ 1.9k
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1.2k
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Cyclic Loess
Cancer affy Cancer affy
15.2 years ago viritha kaza ▴ 580
0
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1
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1.2k
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building annotation package for porcine
Annotation Cancer ChipName genefilter limma AnnotationDbi Annotation Cancer ChipName
updated 15.2 years ago by ★ 7.2k • written 15.2 years ago by ▴ 270
0
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0
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beadarray, bash, hulk, excludeBrihtBeadNeighbors, et al -- how to use practically?
Cancer beadarray Cancer beadarray
15.2 years ago Anand Patel ▴ 60
0
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0
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1.1k
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Two Bioinformatics Openings @ the Institute of Cancer
Cancer Cancer
15.2 years ago Claude Chelala ▴ 40
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1
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1.3k
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GEOquery: Best way to get a phenodata table from GSE
Cancer Cancer
updated 15.2 years ago by 21k • written 15.2 years ago by ★ 1.9k
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0
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1.0k
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Course: Introduction to R / Bioconductor, Seattle Dec 9 / 10
Cancer Cancer
15.2 years ago Martin Morgan 25k
0
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3
replies
933
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A story about IRanges::GappedRanges ... how does it end?
Cancer IRanges Cancer IRanges
updated 15.2 years ago by ★ 11k • written 15.2 years ago by ★ 13k
0
votes
3
replies
1.1k
views
Combining two CompressedNormalIRangesList objects doesn't work
Cancer IRanges Cancer IRanges
15.2 years ago Steve Lianoglou ★ 13k
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0
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788
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Mac binaries for R 2.12 fixed
Cancer Cancer
15.2 years ago Hervé Pagès 16k
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0
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2.1k
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Percentage of Variance to be included at 3D graph, of Principal Component Analysis (PCA)- made4 package
Cancer graph made4 Cancer graph made4
15.2 years ago Aedin Culhane ▴ 510
0
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1
reply
1.6k
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Biobase in R 2.12 referencing libR.dylib from R 2.11, bug?
Cancer Biobase Cancer Biobase
updated 15.2 years ago by 16k • written 15.2 years ago by ▴ 140
0
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2
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2.4k
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ArrayExpress: missing cdf environment!
Cancer hgu133a cdf ArrayExpress Cancer hgu133a cdf ArrayExpress
updated 15.2 years ago by ★ 13k • written 15.2 years ago by ▴ 110
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0
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1.5k
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Job Posting: Scientific Programmer
Sequencing Cancer cdf Sequencing Cancer cdf
15.2 years ago Greg Finak ▴ 240
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4
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1.1k
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Bug in set operations over IRanges objects with non-NULL elementMetadata()
Cancer Cancer
15.2 years ago Steve Lianoglou ★ 13k
0
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5
replies
1.4k
views
Why is *ply-ing over a GRangesList much slower than *ply-ing over an IRangesList?
GO Cancer GO Cancer
updated 15.2 years ago by ★ 13k • written 15.2 years ago by 25k
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3
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1.4k
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RMA XPS Problem on MoGene 1.0 ST
Preprocessing Cancer xps Preprocessing Cancer xps
updated 15.2 years ago by ★ 3.9k • written 15.2 years ago by ▴ 20
0
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2
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751
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Inconistent behavior with all/any and Rle
Cancer Cancer
updated 15.2 years ago by 25k • written 15.2 years ago by ★ 13k
0
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1
reply
667
views
Bug/typo in latest GenomicFeatures (rev 50109)
Cancer Cancer
updated 15.2 years ago by 25k • written 15.2 years ago by ★ 13k
0
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1
reply
1.1k
views
Bug in G/IRanges when slicing with an Rle containing only 1 runLength/value
Cancer Cancer
updated 15.3 years ago by 25k • written 15.3 years ago by ★ 13k
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0
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1.4k
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Flagging overlapping gene exons (was Re: Question about CSAMA10 ...)
Annotation Cancer IRanges GenomicFeatures GenomicRanges Annotation Cancer IRanges
15.3 years ago Steve Lianoglou ★ 13k
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0
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2.1k
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BioNet - interpretation of node score (Eva Benito Garagorri)
SNP Microarray GO Network Clustering Cancer Organism mgug4122a probe limma convert SNP
15.3 years ago Daniela Beißer ▴ 20
0
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0
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841
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Sources of information about amplified genes in cancer
Cancer Cancer
15.3 years ago Daniel Brewer ★ 1.9k
0
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0
replies
768
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Deadline for submitting a package for BioC 2.7
Cancer Cancer
15.3 years ago Hervé Pagès 16k
0
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0
replies
1.1k
views
PICS mm9 mappability map?
Cancer PICS Cancer PICS
15.3 years ago Hamid Bolouri ▴ 90
0
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0
replies
634
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Bioconductor.org to be down Tuesday 14 September
Cancer Cancer
15.3 years ago Dan Tenenbaum ★ 8.2k
2
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2
replies
5.8k
views
Genecards v3 access
Cancer Cancer
updated 15.3 years ago by 21k • written 15.3 years ago by ★ 1.9k
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0
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1.4k
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Postdoctoral Position in Statistical analysis of omics data applied to immunology
Cancer Cancer
15.3 years ago Audrey Kauffmann ▴ 110
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2
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1.5k
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GenomicRanges countOverlaps error
Cancer GenomicRanges Cancer GenomicRanges
updated 15.3 years ago by ★ 13k • written 15.3 years ago by ▴ 20
0
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7
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2.5k
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DNA-Methylation, CopyNumber Results
Normalization Cancer limma copynumber Normalization Cancer limma copynumber
15.3 years ago Ina Hoeschele ▴ 620
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4
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1.4k
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GOstats::geneIdUniverse() and its relation to organism annotation db's
Annotation GO Cancer GOstats Annotation GO Cancer GOstats
updated 15.3 years ago by ▴ 280 • written 15.3 years ago by ★ 13k
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0
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1.3k
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Bioinformatician/Software Engineer position available at Umass Medical School
Genetics GO Cancer PROcess Genetics GO Cancer PROcess
15.4 years ago Julie Zhu ★ 4.3k
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4
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1.9k
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Machine learning, cross validation and gene selection
GO Cancer GO Cancer
updated 15.4 years ago by 6.7k • written 15.4 years ago by ★ 1.9k
0
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2
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1.0k
views
Did the behavior of as.vector(Rle(some.factor)) change on purpose?
Cancer Cancer
updated 15.4 years ago by 25k • written 15.4 years ago by ★ 13k
1
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1
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2.2k
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Biobase: How to replace the ExpressionSet phenoData?
Cancer Cancer
15.4 years ago Daniel Brewer ★ 1.9k
0
votes
6
replies
1.9k
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Why is *ply-ing over a GRangesList much slower than *ply-ing over an IRangesList?
Cancer Cancer
updated 15.4 years ago by ★ 11k • written 15.4 years ago by ★ 13k
0
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5
replies
1.8k
views
A code kata: evening-out *Ranges ends.
Infrastructure Cancer IRanges Infrastructure Cancer IRanges
15.4 years ago Steve Lianoglou ★ 13k
0
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2
replies
2.2k
views
endoapply over GRangesList fails when an empty GRanges object is returned (Bug?)
Cancer Cancer
updated 15.4 years ago by ★ 11k • written 15.4 years ago by ★ 13k
0
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6
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1.3k
views
GenomicRanges:::.similarSeqnameConvention regular expressions needs some tweaking?
Cancer Cancer
15.4 years ago Steve Lianoglou ★ 13k
0
votes
7
replies
1.9k
views
xps: root.profile on a asubset of the data
Cancer xps Cancer xps
updated 15.4 years ago by ★ 3.9k • written 15.4 years ago by ★ 1.9k
0
votes
2
replies
2.1k
views
flowCore read.FCS unable to read FlowJo demo data set
Cancer Cancer
updated 15.4 years ago by ▴ 340 • written 15.4 years ago by ▴ 80
1,555 results • Page 13 of 32
Recent ...
Replies
Comment: Guitar R package requires update due to dependency GenomicFeatures by ferran.llobet.cabau ▴ 10
Thank you @seandavi for your feedback. I followed your recommendations and generated a [pull request][1] including the fix for this issue…
Comment: Ensembl plants at annotationHub? by Guido Hooiveld ★ 4.1k
Hope you don't mind I am not Johannes... ;-) Note that you nowadays can generate these yourselves using the `docker` image Johannes made av…
Comment: How does contrasts.fit do in limma to extract comparisons with a model having in by jtsy6383 • 0
Thanks for the reminder about DiffVar (for that project I ended up using GAMLSS in the end and haven't touched DiffVar since) and the alter…
Comment: Ensembl plants at annotationHub? by jwp48 • 0
Dear Johannes, Would it be possible to generate a EnsDb for the newest Medicago V5 genome release? Medicago truncatula A17 r5.0 This woul…
Answer: please provide a BibTeX citation for "Advanced Single-Cell Analysis with Biocond by Ludwig Geistlinger ▴ 80
When referring to the OSCA book including individual sub-books please cite the OSCA paper: Amezquita, R.A., Lun, A.T.L., Becht, E. et a…
Votes
Comment: Guitar R package requires update due to dependency GenomicFeatures
A: how to control age and gender effect in expression data using DESeq2
A: how to control age and gender effect in expression data using DESeq2
how to control age and gender effect in expression data using DESeq2
Answer: please provide a BibTeX citation for "Advanced Single-Cell Analysis with Biocond
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