Biostar CaseControl

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deseq2 multiple time points time course casecontrol model design

updated 12 months ago by Michael Love 35k • written 4.5 years ago by heikki.sarin ▴ 10

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ExpressionSet caseControl Correlation Plot

updated 4.7 years ago by vulegom • 0 • written 5.0 years ago by DataFanatic • 0

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Comment: Cannot install Phyloseq and dada2 by Guido Hooiveld ★ 3.2k

Did you notice this message:? Installation paths not writeable, unable to update packages path: C:/Program Files/R/R-4.0.0/libra…

Comment: Use of shrunken LFCs to address questions about the distribution of LFCs between by i.sudbery ▴ 20

Thanks Mike. I might have a play with stratifying by expression level. One reason I wasn't looking at gene set testing is that its the nul…

Answer: submitting a BSgenome package by deisianyufg • 0

From my Github repository. I am sorry, I thought the package was already released and realize now that is still only in my github reposito…

Comment: PlotPCA in DESeq2 doesn't produce exactly the same result as prcomp by swbarnes2 ▴ 970

Is the one plot a mirror image of the other?

Answer: Use of shrunken LFCs to address questions about the distribution of LFCs between by Michael Love 35k

hi Ian, Great question, and good to be concerned that the mean expression may be a confounder for either analysis, Why not stratify your…

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Comment: submitting a BSgenome package

Answer: rlog vs vst for outlier identification

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