Biostar CaseControl

Showing : caseControl • reset

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deseq2 multiple time points time course casecontrol model design

updated 2.1 years ago by Michael Love 39k • written 5.6 years ago by heikki.sarin ▴ 10

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ExpressionSet caseControl Correlation Plot

updated 5.7 years ago by vulegom • 0 • written 6.0 years ago by DataFanatic ▴ 10

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Comment: mas5calls function doesn't work; mirna40cdf problem by Guido Hooiveld ★ 3.5k

Also: you could consider using `DABG` for present/absent calls. James elaborated on this in this thread: https://support.bioconductor.org/p…

Comment: mas5calls function doesn't work; mirna40cdf problem by James W. MacDonald 62k

Yes. Follow the recommendation in the link that was provided to you by Lori Shepherd.

Comment: mas5calls function doesn't work; mirna40cdf problem by Berna • 0

Thank you for the information. I did not know that. Would you have a tip how I could proceed differently?

Comment: Correct use of Likelihood Ratio Test and LFC Shrinkage by ayabalbaa1990 • 0

Hi Michael, So I use this res_LRT <- results(dds_lrt) r2=lfcShrink(dds_lrt, coef=7, res=res_LRT) tu run lfcshrink with LRT, is that oko?…

Comment: Combat and dds Object by shaimaa • 0

I used the combat-seq but the deseq complain as its not integer what should i do

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Popular Question to Guido Hooiveld ★ 3.5k

Scholar to James W. MacDonald 62k

Commentator to Michael Love 39k