Showing : catalyst • reset
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Catalyst::cluster function does NOT produce the same results when setting seed
visua Visualization CATALYST
2.1 years ago elefth.pavlos ▴ 40
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2
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1.2k
views
Invalid spillover matrix with values greater than 1
CATALYST
updated 2.5 years ago by ▴ 360 • written 3.4 years ago by • 0
2
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3
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4.0k
views
Keep getting this error "Warning: unable to access index for repository"?
CATALYST
updated 2.7 years ago by 16k • written 2.7 years ago by ▴ 20
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937
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data truncation with sce2fcs()
CATALYST
2.9 years ago Shaun • 0
2
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2
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1.8k
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Unable to download CATALYST
CATALYST
3.5 years ago David • 0
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3
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1.7k
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singlecellexperiments markers after clustering
CATALYST SingleCellExperiment
updated 5.1 years ago by ▴ 70 • written 5.1 years ago by • 0
2
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2
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2.0k
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Updating package CATALYST
CATALYST cytofWorkflow
updated 6.2 years ago by 25k • written 6.2 years ago by • 0
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1
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1.6k
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Error after assignPrelim(), CyTOF compenstation
CATALYST flowCore assignPrelim Error in vapply read.FCS
6.9 years ago j.krop • 0
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Comment: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink by ja569116 • 0
Hi @atpoint Thanks for the information. Could you please expand on when to use adjusted p-values vs nominal p-values. My understanding was …
Answer: limpa analysis advice by Gordon Smyth 53k
It is actually very hard to estimate the DPC from observed data, because the curve is function of unobserved intensities rather than a func…
Answer: When to use edgeR or limma by Gordon Smyth 53k
The short answer is that we generally prefer edgeR for applications with lots of small counts and limma for complex designs with random eff…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
I updated the above answer today.
Answer: When to use edgeR or limma by James W. MacDonald 68k
I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…
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Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
A: deseq2 - paired samples in 2 sequencing types with very different library sizes
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