Showing : catalyst • reset
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Catalyst::cluster function does NOT produce the same results when setting seed
visua Visualization CATALYST
4 months ago elefth.pavlos ▴ 40
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Keep getting this error "Warning: unable to access index for repository"?
CATALYST
updated 11 months ago by 16k • written 11 months ago by ▴ 20
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data truncation with sce2fcs()
CATALYST
14 months ago Shaun • 0
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625
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Invalid spillover matrix with values greater than 1
CATALYST
updated 9 months ago by ▴ 350 • written 20 months ago by • 0
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Unable to download CATALYST
CATALYST
21 months ago David • 0
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singlecellexperiments markers after clustering
CATALYST SingleCellExperiment
updated 3.4 years ago by ▴ 70 • written 3.4 years ago by • 0
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Updating package CATALYST
CATALYST cytofWorkflow
updated 4.4 years ago by 25k • written 4.4 years ago by • 0
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Error after assignPrelim(), CyTOF compenstation
CATALYST flowCore assignPrelim Error in vapply read.FCS
5.2 years ago j.krop • 0
8 results • Page 1 of 1
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Comment: limma for gene expression analysis with big and unbalanced sample size by XW • 0
Could you explain more about the comment "there are no problems with using limma for unbalanced data sets" ? thanks.
Comment: Limma, eBayes different sample size of groups and adjustment by XW • 0
Could you explain more about how the analysis self-correct the different sample sizes when calling DEGs in limma? Thanks
Answer: How do I select a GC file (gc.wig)? (How to determine the inputdata of HMMcopy) by James W. MacDonald 65k
The section of the vignette that is *directly above the one you quote* says that you can use the HMMcopy utils to do all three things. And …
Comment: Help with error using camera() in limma by James W. MacDonald 65k
Again, this is where you need to read the help page and try to diagnose. It says ``` index: an index vector or a list of index vectors. …
Comment: Help with error using camera() in limma by Chris • 0
Thanks James! That is a great tip. cameraRes <- camera(numeric_matrix, geneSets, inter.gene.cor=0.01, design) Error in Stat[iset]…
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Answer: Help with error using camera() in limma
Answer: Help with error using camera() in limma
Comment: Why p value inconsistent when using different number of pathway score?
Nominations for Bioconductor Awards 2024!
Answer: Improving the design matrices vignette in RNAseq123
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Scholar to James W. MacDonald 65k
Popular Question to jeffrey.maurer • 0
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Popular Question to Matthew Ritchie ▴ 1000
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