Showing : cbioportaldata • reset
2
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2
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1.1k
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Error following instructions of CBioportal R-workshop example 2
MultiAssayExperiment cBioPortalData
updated 3.0 years ago by ★ 3.9k • written 3.0 years ago by • 0
0
votes
5
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1.0k
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Filter Mutations?
RaggedExperiment cBioPortalData
updated 20 months ago by 690 • written 20 months ago by • 0
0
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5
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1.0k
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R-API Quick Select?
cBioPortalData
20 months ago ryan.hagenson • 0
1
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2
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766
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clinicalData() is not returning all columns from cBioPortal
cBioPortalData
updated 9 months ago by ▴ 20 • written 3.0 years ago by • 0
0
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0
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249
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loadstudy and cBioDataPack return error in vroom_
cBioPortalData
6 months ago karam • 0
1
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3
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245
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cBioPortalData loads empty z-score expression table
cBioPortalData
updated 5 weeks ago by 690 • written 5 weeks ago by • 0
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Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks by ATpoint ★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Votes
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
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