Bioconductor Celldex

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celldex

2.5 years ago swbarnes2 ★ 1.3k

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SingleR celldex HumanPrimaryCellAtlasData ensembl

updated 2.5 years ago by xiang ▴ 10 • written 2.5 years ago by immuno.dh ▴ 20

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single cell celldex singleR

updated 3.7 years ago by Aaron Lun ★ 28k • written 3.7 years ago by lirongrossmann ▴ 80

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celldex SingleR

updated 2.2 years ago by Aaron Lun ★ 28k • written 2.2 years ago by indigofreesia • 0

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Answer: PCA plot suggestions by Michael Love 41k

For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10

Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…

Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k

Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…

Answer: ATACseq merge peaks by ATpoint ★ 4.0k

That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…

Comment: Deseq2. decontXcounts not integers. Useful alternative? by camp ▴ 10

Yes, @atpoint is correct. decontX decontaminated counts are not integers due to the way the variation inference algorithm works, but you ca…

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