Showing : cgh • reset
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JOB: Microarray Bioinformatics Specialist
Microarray Cancer CGH cycle Microarray Cancer CGH cycle
17.8 years ago Robert Castelo ★ 3.4k
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5
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2.1k
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understanding GOstats p-value
Annotation GO Cancer CGH GOstats Annotation GO Cancer CGH GOstats
updated 18.0 years ago by ▴ 290 • written 18.0 years ago by ▴ 740
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Array CGH from A-Z
CGH CGH
18.1 years ago Srinivas Iyyer ▴ 600
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8
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2.8k
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segmentation aCGH data
Normalization CGH probe limma DNAcopy snapCGH Normalization CGH probe limma DNAcopy
18.2 years ago jhs1jjm@leeds.ac.uk ▴ 230
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1.7k
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Bioconductor 2.1 is released
SNP Microarray SAGE Annotation Bayesian Regression GUI CGH hgu95av2 graph Rgraphviz SNP
18.2 years ago Hervé Pagès 16k
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2.0k
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running time of snapCGH processCGH and runDNAcopy
aCGH Survival CGH annotate genefilter affy DNAcopy aCGH GLAD tilingArray snapCGH aCGH
updated 18.2 years ago by ▴ 230 • written 18.2 years ago by ▴ 110
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2.1k
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processCGH in snapCGH package
CGH snapCGH CGH snapCGH
updated 18.2 years ago by 21k • written 18.2 years ago by ▴ 230
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4
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1.7k
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Agilent CGH data
CGH arrayQuality marray CGH arrayQuality marray
updated 18.2 years ago by 21k • written 18.2 years ago by ▴ 230
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2.5k
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segmentation for Affy SNP arrays
SNP CGH affy GLAD snapCGH SNP CGH affy GLAD snapCGH
updated 18.3 years ago by ▴ 250 • written 18.3 years ago by ▴ 440
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4
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1.6k
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create CNA object in DNAcopy package with agilent data
CGH CGH
updated 18.3 years ago by 21k • written 18.3 years ago by ▴ 230
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1
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DNAcopy package, craeting CNA object
CGH marray DNAcopy CGH marray DNAcopy
updated 18.3 years ago by 21k • written 18.3 years ago by ▴ 230
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8
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annotation files for agilent: a bit off-topic
Annotation CGH Annotation CGH
updated 18.4 years ago by ▴ 100 • written 18.4 years ago by ★ 1.2k
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1.6k
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CGH analysis warning messages
Cancer CGH snapCGH Cancer CGH snapCGH
updated 18.5 years ago by ▴ 70 • written 18.5 years ago by ★ 1.9k
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affy u133x3p chip
Microarray Genetics GO Preprocessing Cancer CGH cdf probe annotate genefilter affy RBGL
18.7 years ago Dick Beyer ★ 1.4k
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how to analyse single chromosome array CGH data using HMM in aCGH library?
aCGH CGH aCGH aCGH CGH aCGH
18.8 years ago Ruppert Valentino ▴ 270
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899
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what is the equivalent of normalize.qspline for 2 color arrays?
Normalization CGH affy limma Normalization CGH affy limma
18.9 years ago Betty Gilbert ▴ 50
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5
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from BAC name to list of genes in that BAC
CGH BAC CGH BAC
updated 18.9 years ago by ▴ 60 • written 18.9 years ago by ▴ 90
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2
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imputing missing data for 70mer array platform, need advice
aCGH CGH multtest impute aCGH oligo aCGH CGH multtest impute aCGH oligo
updated 18.9 years ago by 21k • written 18.9 years ago by ▴ 50
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1
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936
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aCGH across samples
aCGH Cancer CGH aCGH aCGH Cancer CGH aCGH
updated 19.0 years ago by 21k • written 19.0 years ago by ★ 1.9k
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aCGH
aCGH CGH impute aCGH aCGH CGH impute aCGH
19.1 years ago Sean Davis 21k
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1
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1.5k
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How to use snapCGH with Nimblegen data
CGH snapCGH CGH snapCGH
updated 19.2 years ago by ▴ 310 • written 19.2 years ago by ▴ 30
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1.3k
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Scripts to handle array CGH data files from NimbleGen
CGH tilingArray CGH tilingArray
updated 19.3 years ago by ▴ 40 • written 19.3 years ago by ▴ 140
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Analysing categorical CGH data
Clustering Cancer CGH GLAD made4 Clustering Cancer CGH GLAD made4
19.3 years ago Aedin Culhane ▴ 510
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Analysing categorical CGH data
Clustering Cancer CGH made4 Clustering Cancer CGH made4
19.4 years ago Richard Birnie ▴ 10
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870
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spotsegmentation
CGH spotSegmentation CGH spotSegmentation
19.5 years ago Abdel Benajjou ▴ 10
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3
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1.4k
views
Scripts to handle array CGH data files from NimbleGen
aCGH Cancer Breast CGH aCGH aCGH Cancer Breast CGH aCGH
updated 19.5 years ago by ▴ 140 • written 19.5 years ago by ▴ 310
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scripts to process array CGH data files from NimbleGen
aCGH Cancer Breast CGH aCGH aCGH Cancer Breast CGH aCGH
19.5 years ago Steven McKinney ▴ 310
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3
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1.6k
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[JOB] Bioinformatics positions at NCI
SNP Cancer CGH affy SNP Cancer CGH affy
updated 19.6 years ago by ▴ 190 • written 19.6 years ago by 21k
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High-Throughput Data Analysis Course Announcement: Cold Spring Harbor Labs - June 14-27
SNP Microarray Proteomics Normalization Classification Cancer CGH Yeast SNP Microarray
19.8 years ago Mark Reimers ▴ 70
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792
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lowess, quantreg, waveslim
CGH CGH
20.3 years ago Sorani, Marco ▴ 30
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1
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1.0k
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error message from GLAD
CGH GLAD CGH GLAD
updated 20.3 years ago by ▴ 20 • written 20.4 years ago by ▴ 30
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Detecting overrepresented genomic loci
aCGH Clustering CGH geneplotter DNAcopy aCGH GLAD aCGH Clustering CGH geneplotter aCGH
20.7 years ago Yi, Andrew ▴ 20
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882
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cgh
CGH CGH
20.9 years ago Auer Michael ▴ 250
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1.6k
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Problems with aCGH package
aCGH Genetics Cancer CGH impute aCGH aCGH Genetics Cancer CGH impute aCGH
21.5 years ago grischa tödt ▴ 30
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1.8k
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Bioconductor 1.4 released
Proteomics Annotation Normalization GO Cancer CGH pamr gcrma gpls affyPLM webbioc bim
updated 21.6 years ago by ★ 13k • written 21.6 years ago by ▴ 810
85 results • Page 2 of 2
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Answer: NUPOP usage by shepherl 4.2k
You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0
In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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