Bioconductor Cghcall

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cghcall r cgh copy number

8.4 years ago kitcurtius • 0

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1.4k

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aCGH probe DNAcopy aCGH CGHcall aCGH probe DNAcopy aCGH CGHcall

12.2 years ago Guest User ★ 13k

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Normalization CGHcall Normalization CGHcall

14.4 years ago Salih Tuna ▴ 30

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1.9k

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CGHcall CGHcall

updated 14.4 years ago by Sean Davis 21k • written 14.4 years ago by Yan Jiao ▴ 140

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CGH CGHcall CGH CGHcall

15.5 years ago Erik Dassi ▴ 10

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1.4k

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aCGH impute DNAcopy aCGH snapCGH CGHcall aCGH impute DNAcopy aCGH snapCGH CGHcall

15.7 years ago Daniel Rico ▴ 110

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Cancer CGHcall CGHregions Cancer CGHcall CGHregions

16.3 years ago Daniel Rico ▴ 110

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aCGH Normalization Cancer aCGH CGHcall copynumber aCGH Normalization Cancer aCGH CGHcall

updated 17.1 years ago by Daniel Rico ▴ 110 • written 17.1 years ago by James Morris ▴ 40

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Cancer Organism MANOR oligo CGHcall BAC Cancer Organism MANOR oligo CGHcall BAC

updated 17.7 years ago by Henrik Bengtsson ★ 2.4k • written 17.7 years ago by Daniel Rico ▴ 110

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Comment: Announcing GBCC 2025: The first-ever joint conference between Bioconductor and G by dzv20413 • 0

Wow, GBCC 2025 sounds amazing, can not wait to see the logo contest results! Also, I just played [Level Devil][1] and it is super addictive…

Comment: Memory error while running alignments by Erik Wright ▴ 150

How much memory is available on the computer? A distance matrix of 50k sequences requires at least 50k*50k/2 * 8 bytes = 10GB, assuming the…

Comment: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by Gabriel • 0

Thank you very much for the reply. However, none of these three options seems to fit: 1) The genes for which NA appears do not have all 0 …

Comment: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames by ubjw24 • 0

Thank you for your replies. I got the problem solved by installing mutSignature with this line: ``` devtools::install_github("dami82/mutS…

Comment: DESeq2 design for haplotype MPRA by Rita • 0

Thank you very much, I appreciate it!

Votes

Comment: Check removeBatchEffect effectiveness

Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?

Answer: DESeq2 design for haplotype MPRA

A: Different logFC (log2foldchange) values for genes from limma-voom and other too

Comment: Check removeBatchEffect effectiveness

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