Showing : cghcall • reset
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How to combine CGHcall objects
cghcall r cgh copy number
8.6 years ago kitcurtius • 0
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CGHCall problems
aCGH probe DNAcopy aCGH CGHcall aCGH probe DNAcopy aCGH CGHcall
12.4 years ago Guest User ★ 13k
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CGHcall and Normalization
Normalization CGHcall Normalization CGHcall
14.5 years ago Salih Tuna ▴ 30
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CGHcall
CGHcall CGHcall
updated 14.6 years ago by 21k • written 14.6 years ago by ▴ 140
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CGHcall problem
CGH CGHcall CGH CGHcall
15.6 years ago Erik Dassi ▴ 10
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DNAcopy
aCGH impute DNAcopy aCGH snapCGH CGHcall aCGH impute DNAcopy aCGH snapCGH CGHcall
15.9 years ago Daniel Rico ▴ 110
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CGHregions error
Cancer CGHcall CGHregions Cancer CGHcall CGHregions
16.4 years ago Daniel Rico ▴ 110
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CGHcall error
aCGH Normalization Cancer aCGH CGHcall copynumber aCGH Normalization Cancer aCGH CGHcall
updated 17.2 years ago by ▴ 110 • written 17.2 years ago by ▴ 40
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CGHcall error
Cancer Organism MANOR oligo CGHcall BAC Cancer Organism MANOR oligo CGHcall BAC
updated 17.9 years ago by ★ 2.4k • written 17.9 years ago by ▴ 110
9 results • Page 1 of 1
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Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Answer: PTM analysis in LIMPA by Gordon Smyth 53k
For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…
Answer: problem reading bam files into nucleR by James W. MacDonald 68k
The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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Popular Question to James W. MacDonald 68k
Popular Question to Gordon Smyth 53k
Commentator to sina.nassiri ▴ 130
Popular Question to Hervé Pagès 16k
Popular Question to jared.andrews07 ▴ 30
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