Bioconductor Copy number

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629

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cn.MOPS CNV copy number

3.8 years ago liorglic ▴ 10

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1.5k

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copy number

6.4 years ago mms140130 • 0

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691

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cghcall r cgh copy number

6.6 years ago kitcurtius • 0

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1.1k

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bioconductor ChAMP copy number batch effect normalization

updated 6.7 years ago by rasmus.rydbirk ▴ 10 • written 6.8 years ago by apmishra • 0

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900

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ChAMP champ copy number

6.9 years ago apmishra • 0

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2.2k

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CopywriteR copy number

updated 7.8 years ago by t.kuilman 170 • written 7.8 years ago by smcnulty • 0

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868

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crlmm copy number

8.7 years ago kforner • 0

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Answer: WGCNA documentation not available by James W. MacDonald 64k

Although people sometimes ask questions about WGCNA on this support site, it's not a Bioconductor package and therefore off-topic. Peter La…

Comment: ATACseqQC shiftGAlignmentsList() problem by Ou, Jianhong ★ 1.3k

try: `gal1 <- shiftGAlignmentsList(gal, outbam='3-AL1_Tn5_shift.bam')`. I will try to figure out why the memory is so high.

Comment: ATACseqQC shiftGAlignmentsList() problem by jfmay • 0

Thanks for your response. The version of ATACseqQC I'm using is 1.26.0. I tried to set bigFile=TRUE. The resulting object *gal1* still ends…

Answer: biomaRt_getBM_Failed to collect lazy table by James W. MacDonald 64k

That's an old bug that you should be able to fix by updating. I can't remember what package, although `db_collect` comes from `dbplyr` (and…

Comment: rDGIdb package inconsistency with web interface by christopherjamessteel1990 • 0

I went on https://www.dgidb.org/api and searched "RPS3A" and got the below result. Not sure how you got something different. There is certa…

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Answer: ScRNAseq analysis scran :: quickcluster Error

Comment: Ensembl down???

Comment: Problem making orgdb package for bacteria (Pseudomonas) using annotation hub and

Comment: Ensembl down???

Answer: SingleR annotation of several slots/patients

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