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copy number
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0
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724
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cn.MOPS output - mean/median of what?
cn.MOPS
CNV
copy number
4.1 years ago
liorglic
▴ 10
0
votes
1
reply
1.5k
views
how to analyze CNV data
copy number
6.7 years ago
mms140130
• 0
0
votes
0
replies
741
views
How to combine CGHcall objects
cghcall
r
cgh
copy number
6.9 years ago
kitcurtius
• 0
1
vote
1
reply
1.2k
views
Batch Correction and Normalization for champ.CNA
bioconductor
ChAMP
copy number
batch effect
normalization
updated 7.1 years ago by
rasmus.rydbirk
▴ 10 • written 7.1 years ago by
apmishra
• 0
0
votes
0
replies
978
views
champ.CNA error (Error in sort(abs(diff(genomdat)))[1:n.keep])
ChAMP
champ
copy number
7.2 years ago
apmishra
• 0
2
votes
9
replies
2.4k
views
Calling amplifications and deletions from CopywriteR output
CopywriteR
copy number
updated 8.1 years ago by
t.kuilman
▴ 170 • written 8.1 years ago by
smcnulty
• 0
0
votes
0
replies
921
views
Why are the raw copy numbers maxed at 5 and minned at 0 ?
crlmm
copy number
9.0 years ago
kforner
• 0
7 results • Page
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Comment: error when using M-values in ChAMP
by
hortenseguillaume96
• 0
Hello Tian, I'd like to get the M-values matrix so that I can carry out a linear regression study. However, when I apply the champ.load fu…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Votes
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
Answer: error in ChAMP loading file
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