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copy number
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0
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629
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cn.MOPS output - mean/median of what?
cn.MOPS
CNV
copy number
3.8 years ago
liorglic
▴ 10
0
votes
1
reply
1.5k
views
how to analyze CNV data
copy number
6.4 years ago
mms140130
• 0
0
votes
0
replies
691
views
How to combine CGHcall objects
cghcall
r
cgh
copy number
6.6 years ago
kitcurtius
• 0
1
vote
1
reply
1.1k
views
Batch Correction and Normalization for champ.CNA
bioconductor
ChAMP
copy number
batch effect
normalization
updated 6.7 years ago by
rasmus.rydbirk
▴ 10 • written 6.8 years ago by
apmishra
• 0
0
votes
0
replies
900
views
champ.CNA error (Error in sort(abs(diff(genomdat)))[1:n.keep])
ChAMP
champ
copy number
6.9 years ago
apmishra
• 0
2
votes
9
replies
2.2k
views
Calling amplifications and deletions from CopywriteR output
CopywriteR
copy number
updated 7.8 years ago by
t.kuilman
170 • written 7.8 years ago by
smcnulty
• 0
0
votes
0
replies
868
views
Why are the raw copy numbers maxed at 5 and minned at 0 ?
crlmm
copy number
8.7 years ago
kforner
• 0
7 results • Page
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Answer: WGCNA documentation not available
by
James W. MacDonald
64k
Although people sometimes ask questions about WGCNA on this support site, it's not a Bioconductor package and therefore off-topic. Peter La…
Comment: ATACseqQC shiftGAlignmentsList() problem
by
Ou, Jianhong
★ 1.3k
try: `gal1 <- shiftGAlignmentsList(gal, outbam='3-AL1_Tn5_shift.bam')`. I will try to figure out why the memory is so high.
Comment: ATACseqQC shiftGAlignmentsList() problem
by
jfmay
• 0
Thanks for your response. The version of ATACseqQC I'm using is 1.26.0. I tried to set bigFile=TRUE. The resulting object *gal1* still ends…
Answer: biomaRt_getBM_Failed to collect lazy table
by
James W. MacDonald
64k
That's an old bug that you should be able to fix by updating. I can't remember what package, although `db_collect` comes from `dbplyr` (and…
Comment: rDGIdb package inconsistency with web interface
by
christopherjamessteel1990
• 0
I went on https://www.dgidb.org/api and searched "RPS3A" and got the below result. Not sure how you got something different. There is certa…
Votes
Answer: ScRNAseq analysis scran :: quickcluster Error
Comment: Ensembl down???
Comment: Problem making orgdb package for bacteria (Pseudomonas) using annotation hub and
Comment: Ensembl down???
Answer: SingleR annotation of several slots/patients
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