Biostar Copy number

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318

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cn.MOPS CNV copy number

2.5 years ago liorglic ▴ 10

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1.2k

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copy number

5.1 years ago mms140130 • 0

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493

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cghcall r cgh copy number

5.2 years ago kitcurtius • 0

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856

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bioconductor ChAMP copy number batch effect normalization

updated 5.4 years ago by rasmus.rydbirk ▴ 10 • written 5.4 years ago by apmishra • 0

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678

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ChAMP champ copy number

5.5 years ago apmishra • 0

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1.7k

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CopywriteR copy number

updated 6.5 years ago by t.kuilman 170 • written 6.5 years ago by smcnulty • 0

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678

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crlmm copy number

7.4 years ago kforner • 0

7 results • Page 1 of 1

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Comment: unable to install.packages("spatialLIBD") by Leonardo Collado Torres ▴ 1000

All the solutions Lori proposed are valid. The `STexampleData` package I think has only 1 of our samples (see https://bioconductor.org/pack…

Answer: how to use Rsamtools to parse extra fields from STAR alignment by Martin Morgan 25k

The 'extra columns' are called 'tags' in the SAM specification. Following the documentation `?ScanBamParam` you should add `tag = "NH"`. Se…

Comment: DEXSeq: Error in reading counts from htseq "Error in FUN(X[[i]], ...) : subscrip by Delta._.43 ▴ 10

Yes, indeed it is the same error. Here are the first few lines of my count file. ``` "ENSG00000000003":"001" 0 "ENSG00000000003":"002" 1032…

Comment: DEXSeq: Error in reading counts from htseq "Error in FUN(X[[i]], ...) : subscrip by Alejandro Reyes ★ 1.8k

Thanks for your detail post. I think this might be related to this issue here: https://support.bioconductor.org/p/9143537/ Just to verify…

Answer: spot- vs cell-level data access by Leonardo Collado Torres ▴ 1000

Hi, The `SingleCellExperiment` object you can download with `fetch_data(type = "sce")` pre-dates the creation of `SpatialExperiment`. No…

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Answer: spot- vs cell-level data access

Answer: unable to install.packages("spatialLIBD")

Comment: unable to install.packages("spatialLIBD")

error running UniProt.ws

Answer: DEXSeq errors "Error in scan( line ... did not have 3 elements" and "Error in FU

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Popular Question to Alejandro Reyes ★ 1.8k

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Scholar to voogd.o ▴ 10