Bioconductor Cheminformatics

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1.2k

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cellhts2 cheminformatics

updated 7.5 years ago by Joseph Barry ▴ 160 • written 7.5 years ago by Andreia Fonseca ▴ 810

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699

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limma edger deseq2 cheminformatics

updated 5.7 years ago by Aaron Lun ★ 28k • written 5.7 years ago by perdedorium • 0

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912

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bioassayr chemmineR cheminformatics

5.2 years ago Anthony Nash ▴ 20

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software error R cheminformatics package installation eiR

updated 8.0 years ago by khoran • 0 • written 8.0 years ago by rjrich • 0

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831

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cheminf ChemmineOB Cheminformatics ChemmineR

2.8 years ago adelenelai • 0

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1.2k

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Cheminformatics Visualization Cancer Ovarian DEXSeq minfi DESeq2 BaseSpaceR epivizr minfi

10.9 years ago Martin Morgan 25k

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292

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Cheminformatics ChemmineR ChemmineDrugs

9 months ago Sean • 0

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958

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Cheminformatics Clustering Cheminformatics Clustering

16.7 years ago Thomas Girke ★ 1.7k

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885

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Cheminformatics Clustering Cheminformatics Clustering

15.9 years ago Thomas Girke ★ 1.7k

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Metabolomics Cheminformatics Visualization xcms Metabolomics Cheminformatics Visualization

14.2 years ago Gabriella Rustici ▴ 60

10 results • Page 1 of 1

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Comment: Ensembl plants at annotationHub? by Daniele • 0

Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools by BioinfGuru ▴ 30

Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…

Answer: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by makala • 0

Thanks a lot!

Comment: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by Erik Wright ▴ 150

Thanks for notifying us of this broken link. It should be fixed on the Downloads page now. [1] [1]: http://www2.decipher.codes/Classificat…

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa by Matthew Thornton ▴ 360

So it turns out that if the count and the size are the same in 'GOstats", the odds ratio is 'inf'. These are causing the issue. Thank you!!

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Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?

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