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chemmineR
•
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311
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Comparing compounds in CheminneR
Cheminformatics
ChemmineR
ChemmineDrugs
10 months ago
Sean
• 0
0
votes
1
reply
860
views
ChemmineOB expects libopenbabel.7.dylib but latest OpenBabel 2.4.1 contains libopenbabel.5.dylib
cheminf
ChemmineOB
Cheminformatics
ChemmineR
2.9 years ago
adelenelai
• 0
0
votes
0
replies
1.4k
views
How to combined multiple *.mol files into a single *.sdf file using ChemmineR?
ChemmineR
Chemmin
ChemmineOB
3.1 years ago
sukissqz
• 0
3
votes
4
replies
1.4k
views
Error in ChemmineR function propOB() and ChemmineOB prop_OB()
ChemmineR
ChemmineOB
updated 3.4 years ago by
Thomas Girke
★ 1.7k • written 3.5 years ago by
teresadijor
• 0
2
votes
6
replies
1.2k
views
How to remove HCL mols in Chemminer
ChemmineR
Chemistry
updated 5.2 years ago by
khoran
▴ 10 • written 5.3 years ago by
Anthony Nash
▴ 20
1
vote
1
reply
940
views
Bioactivity assay DBs for cheminfo packages
bioassayR
ChemmineR
PubChem
updated 5.3 years ago by
Thomas Girke
★ 1.7k • written 5.3 years ago by
Anthony Nash
▴ 20
1
vote
1
reply
927
views
Where can I locate the bioassayR database?
bioassayr
chemmineR
cheminformatics
5.3 years ago
Anthony Nash
▴ 20
1
vote
4
replies
2.2k
views
How do I convert kegg info on drug to a format allowing me to calculate similarities?
keggrest
chemminer
fmcsr
graph
written 6.3 years ago by
Joris.Meys
• 0
0
votes
0
replies
858
views
Downloading 3D compounds from Pubchem in ChemmineR
chemminer
6.7 years ago
jubilantsundar
• 0
1
vote
2
replies
1.5k
views
drawing chemical from smile 2D/3D
chemminer
updated 7.0 years ago by
Thomas Girke
★ 1.7k • written 7.0 years ago by
Stane
▴ 40
0
votes
0
replies
987
views
Tversky' alpha and beta should not be int, should they?
ChemmineR
7.3 years ago
stephan.struckmann
• 0
0
votes
2
replies
1.4k
views
output of propOB function ChemmineR
ChemmineR
ChemmineOB
ChemmineTools
Drug
7.3 years ago
elisa.micarelli
▴ 10
0
votes
1
reply
2.1k
views
ChemmineR package - fpSim and cmp.similarity - Tanimoto kernels
ChemmineR
updated 8.2 years ago by
Thomas Girke
★ 1.7k • written 8.2 years ago by
ረ
• 0
0
votes
0
replies
1.1k
views
MCS & ChemineR
Network
Clustering
PROcess
ChemmineR
Network
Clustering
PROcess
ChemmineR
11.3 years ago
Thomas Girke
★ 1.7k
0
votes
0
replies
1.2k
views
ChemmineR Help
Clustering
ChemmineR
Clustering
ChemmineR
11.6 years ago
Thomas Girke
★ 1.7k
15 results • Page
1 of 1
Recent ...
Replies
Comment: gds in GEOmetadb 2023-06-26 version is empty
by
Frederico Moraes Ferreira
▴ 100
Try axel -n 20 https://gbnci.cancer.gov/geo/GEOmetadb.sqlite.gz
Comment: Most enriched pathway is not expressed when modifying universe parameter
by
James W. MacDonald
66k
The default for `enrichGO` is to subset to those with a p-value<0.05. You don't adjust that default argument, so you shouldn't have any GO …
Answer: In a 3 group DEG analysis with three batches, can I use 1 group in all three bat
by
Michael Love
42k
You can compare A and C thanks to the sharing of samples from B across 1, 2 and 3.
Comment: Most enriched pathway is not expressed when modifying universe parameter
by
adripel
• 0
In the enrichGO results we have significant and non-significant enriched terms that are displayed. So why would an enriched term (significa…
Answer: Design formula, numeric contrast, and lfcshrink in deseq2
by
Michael Love
42k
For questions about how to construct the correct contrasts correspond to particular hypotheses, I recommend consulting with a local statist…
Votes
Comment: Most enriched pathway is not expressed when modifying universe parameter
Time-course, comparison of two groups
Answer: Behaviour of featureCounts when quantifying multi-mapping reads
Answer: GESA with certain gene list returns no result with human genom, but many result
Answer: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
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swbarnes2
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Stephanie M. Gogarten
▴ 870
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Jonathan
▴ 10
Popular Question
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Frederico Moraes Ferreira
▴ 100
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richardallenfriedmanbrooklyn
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