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chemmineR
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605
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Comparing compounds in CheminneR
Cheminformatics
ChemmineR
ChemmineDrugs
2.3 years ago
Sean
• 0
0
votes
1
reply
1.3k
views
ChemmineOB expects libopenbabel.7.dylib but latest OpenBabel 2.4.1 contains libopenbabel.5.dylib
cheminf
ChemmineOB
Cheminformatics
ChemmineR
4.3 years ago
adelenelai
• 0
0
votes
0
replies
1.9k
views
How to combined multiple *.mol files into a single *.sdf file using ChemmineR?
ChemmineR
Chemmin
ChemmineOB
4.5 years ago
sukissqz
• 0
3
votes
4
replies
1.8k
views
Error in ChemmineR function propOB() and ChemmineOB prop_OB()
ChemmineR
ChemmineOB
updated 4.8 years ago by
Thomas Girke
★ 1.7k • written 4.9 years ago by
teresadijor
• 0
2
votes
6
replies
1.8k
views
How to remove HCL mols in Chemminer
ChemmineR
Chemistry
updated 6.6 years ago by
khoran
▴ 10 • written 6.7 years ago by
Anthony Nash
▴ 20
1
vote
1
reply
1.4k
views
Bioactivity assay DBs for cheminfo packages
bioassayR
ChemmineR
PubChem
updated 6.7 years ago by
Thomas Girke
★ 1.7k • written 6.7 years ago by
Anthony Nash
▴ 20
1
vote
1
reply
1.3k
views
Where can I locate the bioassayR database?
bioassayr
chemmineR
cheminformatics
6.7 years ago
Anthony Nash
▴ 20
1
vote
4
replies
2.9k
views
How do I convert kegg info on drug to a format allowing me to calculate similarities?
keggrest
chemminer
fmcsr
graph
written 7.7 years ago by
Joris.Meys
• 0
0
votes
0
replies
1.2k
views
Downloading 3D compounds from Pubchem in ChemmineR
chemminer
8.1 years ago
jubilantsundar
• 0
1
vote
2
replies
2.1k
views
drawing chemical from smile 2D/3D
chemminer
updated 8.4 years ago by
Thomas Girke
★ 1.7k • written 8.4 years ago by
Stane
▴ 40
0
votes
0
replies
1.2k
views
Tversky' alpha and beta should not be int, should they?
ChemmineR
8.7 years ago
stephan.struckmann
• 0
0
votes
2
replies
2.0k
views
output of propOB function ChemmineR
ChemmineR
ChemmineOB
ChemmineTools
Drug
8.7 years ago
elisa.micarelli
▴ 10
0
votes
1
reply
2.4k
views
ChemmineR package - fpSim and cmp.similarity - Tanimoto kernels
ChemmineR
updated 9.6 years ago by
Thomas Girke
★ 1.7k • written 9.6 years ago by
ረ
• 0
0
votes
0
replies
1.5k
views
MCS & ChemineR
Network
Clustering
PROcess
ChemmineR
Network
Clustering
PROcess
ChemmineR
12.7 years ago
Thomas Girke
★ 1.7k
0
votes
0
replies
1.6k
views
ChemmineR Help
Clustering
ChemmineR
Clustering
ChemmineR
13.0 years ago
Thomas Girke
★ 1.7k
15 results • Page
1 of 1
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Replies
Comment: Getting a large intercept with DESeq2
by
James W. MacDonald
68k
As a trivial example, consider this: ``` > model.matrix(~Treatment, data.frame(Treatment = factor(rep(1:3, each = 4)))) (Intercept) Tre…
Answer: Getting a large intercept with DESeq2
by
James W. MacDonald
68k
The default parameterization in R is a treatment-contrasts parameterization that sets one of your groups as the baseline. So the intercept …
Answer: Must I do pseudobulk analysis on Cell Surface Protein Labeling data of Single C
by
ATpoint
★ 5.0k
There is no "MUST", but pseudobulk aggregation is beneficial to a) enable use of tested and robust methods such as limma (though it could u…
Answer: Post translational modifications and phosphoproteomics in limpa?
by
Gordon Smyth
53k
Yes, we use limpa for PTMs ourselves. I assume your data is preprocessed so that each row corresponds to a PTM. You replace dpcQuant() with…
Comment: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif
by
Matthew Thornton
▴ 380
WOW! Thank you so much for the information. I will do this.
Votes
Answer: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif
Using edgeR or DESeq2 to analyze allele-specific expression?
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
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