17 months ago
Sean
•
0
0
votes
0
replies
447
views
0
votes
1
reply
1.0k
views
0
votes
0
replies
1.7k
views
3
votes
4
replies
1.6k
views
updated 3.9 years ago by
Thomas Girke
★
1.7k
•
written 4.1 years ago by
teresadijor
•
0
2
votes
6
replies
1.4k
views
updated 5.8 years ago by
khoran
▴
10
•
written 5.9 years ago by
Anthony Nash
▴
20
1
vote
1
reply
1.1k
views
updated 5.8 years ago by
Thomas Girke
★
1.7k
•
written 5.8 years ago by
Anthony Nash
▴
20
1
vote
1
reply
1.1k
views
5.8 years ago
Anthony Nash
▴
20
1
vote
4
replies
2.4k
views
written 6.8 years ago by
Joris.Meys
•
0
0
votes
0
replies
1.0k
views
7.2 years ago
jubilantsundar
•
0
1
vote
2
replies
1.8k
views
updated 7.5 years ago by
Thomas Girke
★
1.7k
•
written 7.6 years ago by
Stane
▴
40
0
votes
0
replies
1.1k
views
0
votes
2
replies
1.7k
views
7.9 years ago
elisa.micarelli
▴
10
0
votes
1
reply
2.2k
views
updated 8.7 years ago by
Thomas Girke
★
1.7k
•
written 8.7 years ago by
ረ
•
0
0
votes
0
replies
1.3k
views
11.8 years ago
Thomas Girke
★
1.7k
0
votes
0
replies
1.4k
views
12.1 years ago
Thomas Girke
★
1.7k
Recent ...
Replies
Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis
by
Andre
•
0
The estimateGLMRobustDisp() function seems to have an effect on glmQLFit(), even in edgeR 4 (4.4.1).
If I use estimateGLMRobustDisp(), like…
Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis
by
Gordon Smyth
52k
Here, estimateGLMRobustDisp() was used just to get the diagnostic BCV plot by plotBCV(y). The robust NB dispersions were not used for the D…
Answer: Please, I desperately need help with DESeq2. Three groups of repeated measures w
by
Michael Love
43k
I have to reserve my time on the support site for software related questions. I recommend working with a local statistician or someone fami…
Answer: Is it possible to work with DESeq2 where data is not properly matched for sex a
by
Michael Love
43k
I would probably just do the M vs M analysis. You could instead include a term for sex and have a model with all 45 samples, but the M vs M…
Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis
by
Andre
•
0
They provide the code they used for DGE analysis in a gitlab link that can be found in the paper. In there you can find:
````
# estimate d…
Votes
Awards
• All
Popular Question to
Ken C
•
0
Popular Question to
gingergeiger22
•
0
Popular Question to
Gordon Smyth
52k
Popular Question to
Chris
▴
20
Locations
• All
United States, 3 minutes ago
Portugal, 1 hour ago
India, 2 hours ago
UPF, Barcelona, Spain, 2 hours ago
The city by the bay, 3 hours ago
United States, 3 minutes ago
Portugal, 1 hour ago
India, 2 hours ago
UPF, Barcelona, Spain, 2 hours ago
The city by the bay, 3 hours ago
Traffic: 500 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6