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chemmineR
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481
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Comparing compounds in CheminneR
Cheminformatics
ChemmineR
ChemmineDrugs
19 months ago
Sean
• 0
0
votes
1
reply
1.1k
views
ChemmineOB expects libopenbabel.7.dylib but latest OpenBabel 2.4.1 contains libopenbabel.5.dylib
cheminf
ChemmineOB
Cheminformatics
ChemmineR
3.6 years ago
adelenelai
• 0
0
votes
0
replies
1.7k
views
How to combined multiple *.mol files into a single *.sdf file using ChemmineR?
ChemmineR
Chemmin
ChemmineOB
3.8 years ago
sukissqz
• 0
3
votes
4
replies
1.6k
views
Error in ChemmineR function propOB() and ChemmineOB prop_OB()
ChemmineR
ChemmineOB
updated 4.1 years ago by
Thomas Girke
★ 1.7k • written 4.3 years ago by
teresadijor
• 0
2
votes
6
replies
1.5k
views
How to remove HCL mols in Chemminer
ChemmineR
Chemistry
updated 6.0 years ago by
khoran
▴ 10 • written 6.0 years ago by
Anthony Nash
▴ 20
1
vote
1
reply
1.2k
views
Bioactivity assay DBs for cheminfo packages
bioassayR
ChemmineR
PubChem
updated 6.0 years ago by
Thomas Girke
★ 1.7k • written 6.0 years ago by
Anthony Nash
▴ 20
1
vote
1
reply
1.1k
views
Where can I locate the bioassayR database?
bioassayr
chemmineR
cheminformatics
6.0 years ago
Anthony Nash
▴ 20
1
vote
4
replies
2.6k
views
How do I convert kegg info on drug to a format allowing me to calculate similarities?
keggrest
chemminer
fmcsr
graph
written 7.0 years ago by
Joris.Meys
• 0
0
votes
0
replies
1.1k
views
Downloading 3D compounds from Pubchem in ChemmineR
chemminer
7.4 years ago
jubilantsundar
• 0
1
vote
2
replies
1.9k
views
drawing chemical from smile 2D/3D
chemminer
updated 7.7 years ago by
Thomas Girke
★ 1.7k • written 7.7 years ago by
Stane
▴ 40
0
votes
0
replies
1.2k
views
Tversky' alpha and beta should not be int, should they?
ChemmineR
8.0 years ago
stephan.struckmann
• 0
0
votes
2
replies
1.7k
views
output of propOB function ChemmineR
ChemmineR
ChemmineOB
ChemmineTools
Drug
8.1 years ago
elisa.micarelli
▴ 10
0
votes
1
reply
2.3k
views
ChemmineR package - fpSim and cmp.similarity - Tanimoto kernels
ChemmineR
updated 8.9 years ago by
Thomas Girke
★ 1.7k • written 8.9 years ago by
ረ
• 0
0
votes
0
replies
1.3k
views
MCS & ChemineR
Network
Clustering
PROcess
ChemmineR
Network
Clustering
PROcess
ChemmineR
12.0 years ago
Thomas Girke
★ 1.7k
0
votes
0
replies
1.4k
views
ChemmineR Help
Clustering
ChemmineR
Clustering
ChemmineR
12.3 years ago
Thomas Girke
★ 1.7k
15 results • Page
1 of 1
Recent ...
Replies
Answer: Use of org.Rn.eg.db with GRCr8 reference genome
by
James W. MacDonald
68k
You've got it backwards. It should be ``` adult_res_df$symbol <- mapIds(org.Rn.eg.db, keys = rownames(adult_res_df), column = "ENSEMBL"…
Comment: DESeq2 swap ensembl gene id rownames with gene symbol column
by
Erika
• 0
Alternatively, you could have added a column with the common gene names. Assuming your dataframe `df` was created using `DESeq()`, somethin…
Answer: Clarification on GOALL / GO2ALLORFs mapping
by
James W. MacDonald
68k
It appears that 'negative regulation of glycogen biosynthesis' has an 'is a' relationship with 'glycogen biosynthetic process' https://www.…
Comment: Can't post a question?
by
DavideSant
• 0
Thank you, this was super useful!
Comment: Error in retrieving clinical data
by
silickas
• 0
Thank you for the reply. I will try to do that next time. This time instead, I used the GenomicDataCommons package to download clinical dat…
Votes
Comment: Can't post a question?
Answer: Limma - Complex 2-way multi-level contrast with paired samples
Answer: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks
Help with creation of an OrgDB package and conduction of a bioinformatical analysis of gene expression
Answer: Loading Ensembl 98 EnsDb from Annotation Hub fails with database disk image malf
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