Showing : chipname • reset
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Beadarray import of iScan generated Illumina gene expression data
Microarray GO ChipName beadarray Microarray GO ChipName beadarray
updated 10.0 years ago by • 0 • written 14.2 years ago by ▴ 350
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2
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problem with creating array annotation package
Microarray Annotation ChipName Microarray Annotation ChipName
updated 12.4 years ago by ★ 3.9k • written 12.4 years ago by ★ 4.1k
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8. CGHCall problems (Bernard North [guest]) : Bioconductor Digest, Vol 126, Issue 7
aCGH RNASeq ChIPSeq Proteomics Annotation Normalization GO Network Cancer ChipName probe
12.4 years ago Sarah JugurnauthLittle ▴ 20
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答复: an error in AnnotationForge
Annotation ChipName annotate affy AnnotationForge Annotation ChipName annotate affy
12.5 years ago joseph ▴ 50
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1.4k
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an error in AnnotationForge
Annotation ChipName annotate affy AnnotationForge Annotation ChipName annotate affy
updated 12.5 years ago by ★ 7.2k • written 12.5 years ago by ▴ 50
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Error in sqliteExecStatement(con, statement, bind.data)
Microarray ChipName oligo Microarray ChipName oligo
13.0 years ago Guest User ★ 13k
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4
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AnnotationForge example does not work
GO Cancer ChipName probe affy GO Cancer ChipName probe affy
updated 13.2 years ago by ▴ 120 • written 13.2 years ago by ★ 13k
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1
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AnnotationDBI
GO ChipName probe affy GO ChipName probe affy
updated 13.4 years ago by 68k • written 13.4 years ago by ★ 13k
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makeOrgPackageFromNCBI another error - reversed commands
BiocViews GO Organism ChipName biocViews BiocViews BiocViews GO Organism ChipName
13.9 years ago Guest User ★ 13k
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AnnotationDbi error
Annotation ChipName Annotation ChipName
15.1 years ago marco fabbri ▴ 320
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1
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1.2k
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building annotation package for porcine
Annotation Cancer ChipName genefilter limma AnnotationDbi Annotation Cancer ChipName
updated 15.3 years ago by ★ 7.2k • written 15.3 years ago by ▴ 270
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Question regarding Installation of annotation package which was built using SQLforge (Suyog Pol)
Annotation GO Cancer ChipName probe genefilter PROcess Annotation GO Cancer ChipName
16.0 years ago Suyog Pol ▴ 40
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Question regarding Installation of annotation package which was built using SQLforge (Suyog Pol)
Annotation GO ChipName probe genefilter Annotation GO ChipName probe genefilter
updated 16.0 years ago by 25k • written 16.0 years ago by ▴ 40
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Question regarding Installation of annotation package which was built using SQLforge
Annotation GO ChipName probe PROcess Annotation GO ChipName probe PROcess
updated 16.1 years ago by ★ 7.4k • written 16.1 years ago by ▴ 40
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hyperGTest, different Results using different annotation packages
Microarray Annotation GO ChipName db0 GOstats Category Microarray Annotation GO ChipName
16.9 years ago Wiebke Iffert ▴ 20
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7
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ragene10st
Annotation GO Rattus norvegicus ChipName cdf probe affy AnnotationDbi AffyCompatible GO
updated 16.9 years ago by ▴ 630 • written 17.0 years ago by ▴ 370
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2.1k
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problem with AnnotationDbi
ChipName db0 affy Category AnnotationDbi ChipName db0 affy Category AnnotationDbi
updated 17.3 years ago by 16k • written 17.3 years ago by ▴ 830
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1
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1.7k
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ACCNUM match zero using AnnotationDBI package
GO ChipName AnnBuilder AnnotationDbi GO ChipName AnnBuilder AnnotationDbi
updated 17.3 years ago by ★ 7.2k • written 17.3 years ago by ▴ 120
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xps Error in exonLevel(exonlevel, chiptype) : invalid argument ‘exonlevel’
ChipName affy xps ChipName affy xps
updated 17.8 years ago by ★ 3.9k • written 17.8 years ago by ★ 1.4k
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806
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affyPLM query
ChipName ChipName
20.5 years ago Caroline Johnston ▴ 70
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Custom CDF files
ChipName cdf probe makecdfenv gcrma ChipName cdf probe makecdfenv gcrma
21.1 years ago Ken Simpson ▴ 70
21 results • Page 1 of 1
Recent ...
Replies
Comment: Which preprocessing steps are needed before running limpa? by miro165sabo • 0
Hi @gordonsmyth, thank you a lot for very fast and valuable response. I edited the question to provide more details.
Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ? by Gordon Smyth 53k
I tend to use dpcCN(), because it more robust than dpc() to experiments with lots of samples and big differences between samples. You coul…
Answer: Which preprocessing steps are needed before running limpa? by Gordon Smyth 53k
Please see the example limpa analyses given at <http://github.com/smythlab/limpa>, especially the kidney cancer case study. limpa does not…
Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name by Korneel • 0
Thanks for the quick reply! If I understand correctly, I think if I keep track of the full lineage, I shouldn't have any risk of collapsin…
Comment: Pathway abundance data from Curatedmetagenomics by yesquokkan • 0
Hello, I was also wondering about the same issue. Did you figure it out?
Votes
Answer: Which preprocessing steps are needed before running limpa?
Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?
Answer: Which preprocessing steps are needed before running limpa?
Answer: Which preprocessing steps are needed before running limpa?
Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?
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