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GenomicAlignments BAM CIGAR

updated 5.2 years ago by Janet Young ▴ 740 • written 5.2 years ago by Shian Su ▴ 40

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cigar not-implemented-yet

updated 5.2 years ago by Hervé Pagès 16k • written 5.2 years ago by stephen.rudd • 0

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Rsubread cigar

updated 5.3 years ago by Gordon Smyth 52k • written 5.3 years ago by lauren.fitch • 0

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rsamtools alignment cigar

7.5 years ago Frocha ▴ 20

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bsgenome cigar alignment

updated 10.1 years ago by Hervé Pagès 16k • written 10.1 years ago by Stefanie Tauber ▴ 40

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Answer: promoters_txdb <- promoters(txdb, upstream = 2000) is not 2000 by James W. MacDonald 67k

If you use `promoters` and do not provide an argument for something that has a default, you will get the default argument. Your last call t…

Comment: org.Hs.eg.db issue by k.panov • 0

installed R on another PC, works perfectly. ergo, problem outside of R probably..... :-(

Comment: MBDseq analysis using qsea package by Lukas ▴ 20

Hi, I checked in with Matthias and here is his response: You need to indicate "samples": "The indices of the samples for which individu…

Comment: DESeq2 analysis with transcript counts by sindhuri • 0

Thank you for the response. Currently I am using the R studio for analysis and Im running DESeq2 for analysis of the **transcript counts.ts…

Comment: iam not able to do retrive data using GEOquery R package by James W. MacDonald 67k

Another alternative is to use the `GEOmetadb` package ([vignette here)][1], which will allow you to make queries to identify GEO datasets t…

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Answer: Issue carrying out DiffBind Analysis at a predefined peak set

Answer: Differential variability modelling with vst() expression

Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu

Answer: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu

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