Bioconductor Cigar

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GenomicRanges cigarRangesAlongReferenceSpace GenomicAlignments Cigar

9 months ago pineiroalejandro ▴ 10

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GenomicAlignments BAM CIGAR

updated 6.3 years ago by Janet Young ▴ 740 • written 6.3 years ago by Shian Su ▴ 40

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cigar not-implemented-yet

updated 6.3 years ago by Hervé Pagès 16k • written 6.3 years ago by stephen.rudd • 0

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Rsubread cigar

updated 6.4 years ago by Gordon Smyth 53k • written 6.4 years ago by lauren.fitch • 0

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rsamtools alignment cigar

8.6 years ago Frocha ▴ 20

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bsgenome cigar alignment

updated 11.2 years ago by Hervé Pagès 16k • written 11.2 years ago by Stefanie Tauber ▴ 40

6 results • Page 1 of 1

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Answer: Bulk RNAseq analysis for by James W. MacDonald 68k

In my experience, the within-clone variability of differentiated stem cells is often as large or larger than the between-clone variability,…

Comment: Jobs at Ensembl by frostybuddyy • 0

I found your blog "Jobs at Ensembl" quite fascinating! The way you talked about the convergence of bioinformatics and data science in emplo…

Comment: Postdoctoral Fellow (Computational Biology / Bioinformatics) - Neuroepigenetics by mudasarnaeem2020 • 0

Promoting UDISE+ Features on Social Media to Increase Awareness https://udisseplus.com/[enter link description here][1] [1]: https://ud…

Comment: soGGi error by shepherl 4.3k

We have tried to contact the soGGi maintainer to have them update the package to the newer version of gglot2 but they have so far been unre…

Comment: using limma trend workflow in CAMERA by Gordon Smyth 53k

No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.

Votes

Answer: DiffBind differential analysis

Answer: Limma-voom sample weights and impact on DEG numbers

C: Why limma, edgeR, and DESeq did not implement fold change moderation first?

Comment: using limma trend workflow in CAMERA

C: z-score with DESeq2?

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Popular Question to Guido Hooiveld ★ 4.1k