Bioconductor Clinicaldata

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clinicaldata translational genomics diagnostics research Job

7.3 years ago Daniel Stekhoven ▴ 10

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data integration clinicaldata gene expression data PET

8.2 years ago svlachavas ▴ 820

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machinelearning clinicaldata biomarkers data integration bioconductor

8.6 years ago svlachavas ▴ 820

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Comment: GOslim missing GO term by amanda • 0

Thank you for the advice and many thanks! It is WGCNA analysis. I will try your method today and see if there are some consistencies.

Comment: GOslim missing GO term by James W. MacDonald 64k

Is this a WGCNA analysis (multiple co-expression clusters sounds like WGCNA)? If so, none of that is inferential or easily interpreted. It …

Comment: GOslim missing GO term by amanda • 0

For each group, I generated multiple co-expression clusters, and within each cluster, cluster PC1 was correlated with PC1 of multiple clini…

Comment: GOslim missing GO term by James W. MacDonald 64k

What do you mean by 'enriched with ... GO terms from their correlations with clinical traits'? Are you doing a GO hypergeometric or somethi…

Comment: GOslim missing GO term by amanda • 0

I have multiple groups to compare with, and each enriched with hundreds of GO terms from their correlations with clinical traits (top1 pval…

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Scholar to James W. MacDonald 64k

Scholar to Assa Yeroslaviz ★ 1.5k