Bioconductor Clinicaldata

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clinicaldata translational genomics diagnostics research Job

8.2 years ago Daniel Stekhoven ▴ 10

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data integration clinicaldata gene expression data PET

9.1 years ago svlachavas ▴ 830

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machinelearning clinicaldata biomarkers data integration bioconductor

9.5 years ago svlachavas ▴ 830

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Comment: ChAMP - obtaining beta values using EPICv2 annotation by Aurora • 0

Have you solved it? I have the same problem as you

Comment: Unable to install any Bioconductor package with new R 4.4.1 - path nor writable by gabry.scata ▴ 10

Hi James, and thank you so much for your quick reply! That's great to know that I have installed successfully the packages i wanted. What …

Comment: pathview error "negative length vectors are not allowed by Evan • 0

Same for N-glycan metabolism-- fails with `same.layer = TRUE` , smudges and comet-like shading with `same.layer = FALSE`, crowded web with …

Comment: How to conduct maSigPro analysis with only one condition? by James W. MacDonald 67k

Technically it's fitting an analysis of deviance (ANODEV) test, but the principle is the same - deviance, like the likelihood, measures goo…

Comment: How to conduct maSigPro analysis with only one condition? by James W. MacDonald 67k

Yeah, it's fine. What `maSigPro` does in this case is to reformulate the data. Your design has columns that are not useful, and `maSigPro` …

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