Bioconductor Cnetplot

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cnetplot R clusterProfiler

updated 20 months ago by Guido Hooiveld ★ 4.1k • written 21 months ago by YNKIM ▴ 10

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clusterProfiler enrichplot cnetplot GuangchuangYu

updated 2.2 years ago by Guangchuang Yu ★ 1.2k • written 2.5 years ago by adR ▴ 40

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clusterProfiler enrichKEGG cnetplot

3.0 years ago fatimaruizdelabastida ▴ 10

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clusterProfiler enrichplot cnetplot

updated 4.9 years ago by James W. MacDonald 67k • written 4.9 years ago by anders.tondell ▴ 30

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Comment: Struggle with the replicates of epic array data by Melisa Tecik • 0

Thanks you so much for the instructions. I also tried M values as you suggested but sadly the result was the same. Apparently, the problem …

Answer: bioconductor packages on bioconda by James W. MacDonald 67k

The bioconda people are responsible for bioconda, so you should ask them if/when they are going to update.

Answer: txdb.mmusculus.ucsc.mm10.knowngene issue on X chromosome by James W. MacDonald 67k

The default for `plotKaryotype` is to use hg19.

Comment: Is it possible to parallelise saveHDF5SummarizedExperiment by Stefano Mangiola ▴ 20

saveTileDBSummarizedExperiment would be awesome. I think we need performance for execution time and memory required to save.

Comment: Create Illmina bead summary data by Liu • 0

Hi! Yes, thank you! I completely agree. I am just curious about how these two files are processed with AVG_Gre and detection p-value. I am …

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Answer: Struggle with the replicates of epic array data

Answer: bioconductor packages on bioconda

Appropriate use of the function treat of the limma package

Comment: Is it recommended to analyze different tissues together when using edgeR

Answer: Deseq2 res Function

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Scholar to James W. MacDonald 67k