Bioconductor Cnetplot

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cnetplot R clusterProfiler

updated 20 months ago by Guido Hooiveld ★ 4.1k • written 20 months ago by YNKIM ▴ 10

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clusterProfiler enrichplot cnetplot GuangchuangYu

updated 2.2 years ago by Guangchuang Yu ★ 1.2k • written 2.4 years ago by adR ▴ 40

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clusterProfiler enrichKEGG cnetplot

2.9 years ago fatimaruizdelabastida ▴ 10

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clusterProfiler enrichplot cnetplot

updated 4.8 years ago by James W. MacDonald 67k • written 4.8 years ago by anders.tondell ▴ 30

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Comment: Problem at champ.load by icecreamlover • 0

Hello! Were you able to figure this out? I am running into the same error!

Comment: ChAMP - obtaining beta values using EPICv2 annotation by icecreamlover • 0

Hello, Were you able to fix the error? I used the same document and I am running into the same error. I am curious if you have any feedba…

Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0

Can this please be revisited and corrected ASAP? I'm encountering the same issue, using a slightly more modern version of R (4.1.0). It s…

Comment: Combining RNAseq and microarray data using edgeR/limma-voom by Adam Marstrand • 0

Thank you!

Comment: Combining RNAseq and microarray data using edgeR/limma-voom by Adam Marstrand • 0

Hi Gordon, Thanks for the answer! This makes a lot of sense. Your suggested pipeline (separate processing of datasets -> gene set analyses…

Votes

A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis

Answer: Combining RNAseq and microarray data using edgeR/limma-voom

Answer: How do I merge a list of GRanges?

A: p.adjust BH generates duplicate values

Answer: Adjusted p-values become NA when sub-setting samples

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