Bioconductor Cnvtools

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genomicranges cnvtools

6.5 years ago julrodr80 ▴ 30

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cnv cnvtools crlmm

7.7 years ago enriquev • 0

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1.6k

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copynumber cnvtools cnv copywriteR

updated 7.8 years ago by t.kuilman ▴ 170 • written 7.8 years ago by ahinsahr11 • 0

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cn.mops cnvtools tcga cnv

updated 8.5 years ago by Günter Klambauer ▴ 540 • written 8.5 years ago by vakul.mohanty ▴ 20

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cn.mops cnv cnvtools

updated 8.8 years ago by Günter Klambauer ▴ 540 • written 8.8 years ago by voksdvoks • 0

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cn.mops cnv cnvtools

updated 8.8 years ago by Martin Morgan 25k • written 8.8 years ago by bioconductor • 0

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CNVtools CNVtools

updated 14.2 years ago by Sean Davis 21k • written 14.2 years ago by Bryan Hepworth ▴ 30

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863

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CNVtools CNVtools

14.5 years ago Vincent Plagnol ▴ 10

8 results • Page 1 of 1

Recent ...

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Answer: SGSeq: moving toward diffex from SGSeq analysis by Leonard Goldstein ▴ 200

`vid` and `eid` are unique identifiers for splice variants and splicing events respectively. They are analogous to exon bin and gene identi…

Comment: Help with error using camera() in limma by Chris • 0

Thanks James! I fixed the error. I try gene symbol instead of entrez and it worked.

Comment: limma for gene expression analysis with big and unbalanced sample size by XW • 0

Could you explain more about the comment "there are no problems with using limma for unbalanced data sets" ? thanks.

Comment: Limma, eBayes different sample size of groups and adjustment by XW • 0

Could you explain more about how the analysis self-correct the different sample sizes when calling DEGs in limma? Thanks

Answer: How do I select a GC file (gc.wig)? (How to determine the inputdata of HMMcopy) by James W. MacDonald 65k

The section of the vignette that is *directly above the one you quote* says that you can use the HMMcopy utils to do all three things. And …

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SPIA plotP giving error

Answer: Fold change calculation in Diffbind vs. DESEQ2?

C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB

C: Extremely big genes in annotation TxDb packages

Make custom Txdb class objects from Txdb

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