Bioconductor Cnvtools

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836

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genomicranges cnvtools

6.0 years ago julrodr80 ▴ 30

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1.1k

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cnv cnvtools crlmm

7.2 years ago enriquev • 0

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1.3k

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copynumber cnvtools cnv copywriteR

updated 7.2 years ago by t.kuilman 170 • written 7.2 years ago by ahinsahr11 • 0

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1.7k

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cn.mops cnvtools tcga cnv

updated 7.9 years ago by Günter Klambauer ▴ 540 • written 7.9 years ago by vakul.mohanty ▴ 10

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1.6k

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cn.mops cnv cnvtools

updated 8.2 years ago by Günter Klambauer ▴ 540 • written 8.2 years ago by voksdvoks • 0

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2.1k

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cn.mops cnv cnvtools

updated 8.2 years ago by Martin Morgan 25k • written 8.2 years ago by bioconductor • 0

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813

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CNVtools CNVtools

updated 13.6 years ago by Sean Davis 21k • written 13.6 years ago by Bryan Hepworth ▴ 30

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765

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CNVtools CNVtools

13.9 years ago Vincent Plagnol ▴ 10

8 results • Page 1 of 1

Recent ...

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Answer: Problems with FLOWAI by SHASHI • 0

Additionally, if you're looking to clean FCS data files, you can utilize an R script. I've prepared a comprehensive YouTube tutorial to aid…

Answer: Is SeqSQC compatible with hg38? by James W. MacDonald 63k

I'll answer your question with a question. Is there any reason to believe that things like IBD or PCA or Sex checks would be dependent on t…

Comment: using featureCounts (Subread) to count only spliced reads per gene - behavior of by Gregory • 0

Thanks for the prompt response, Gordon. I'm looking for count at the gene level - the gene id is the meta feature, so one row per gene in …

Comment: DiffBind handling of replicates and consensus by Rory Stark ★ 5.0k

You may want to try different values for the `normalize` parameter: dbObj <- dba.normalize(DBA = dbObj, library = "RiP", normalize=DBA…

Comment: DiffBind: dba.plotProfile(profiles) by Rory Stark ★ 5.0k

Yes, setting `raster_quality` down is a good way to address this issue. I've taken to using `raster_quality=1` in general as I think the pl…

Votes

Answer: How do I merge a list of GRanges?

Comment: biomaRt code/getBM function no longer importing 'coding' sequence via seqType ar

Comment: DiffBind: dba.plotProfile(profiles)

Answer: DiffBind - how to prep the sample matrix when multiple bam files are used by MAC

Comment: DiffBind: dba.plotProfile(profiles)

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