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cnvtools
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Calculate the CNV frequency in a dataset
genomicranges
cnvtools
6.5 years ago
julrodr80
▴ 30
0
votes
0
replies
1.2k
views
crlmm: Does it support Illumina BeadChip platform HumanCore-24v1-0_A
cnv
cnvtools
crlmm
7.7 years ago
enriquev
• 0
0
votes
1
reply
1.6k
views
CopywriteR: CNV calling on normals samples / gaps in chromosomes
copynumber
cnvtools
cnv
copywriteR
updated 7.8 years ago by
t.kuilman
▴ 170 • written 7.8 years ago by
ahinsahr11
• 0
0
votes
4
replies
1.9k
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Using cn.MOPs to estimate CNVs in tumors without reference normal
cn.mops
cnvtools
tcga cnv
updated 8.5 years ago by
Günter Klambauer
▴ 540 • written 8.5 years ago by
vakul.mohanty
▴ 20
2
votes
2
replies
1.7k
views
Adjusting the defaults in the cn.MOPs Package
cn.mops
cnv
cnvtools
updated 8.8 years ago by
Günter Klambauer
▴ 540 • written 8.8 years ago by
voksdvoks
• 0
2
votes
8
replies
2.3k
views
Copy Number Variation in the cn.mops Package
cn.mops
cnv
cnvtools
updated 8.8 years ago by
Martin Morgan
25k • written 8.8 years ago by
bioconductor
• 0
0
votes
1
reply
901
views
CNVtools installation error - not available
CNVtools
CNVtools
updated 14.2 years ago by
Sean Davis
21k • written 14.2 years ago by
Bryan Hepworth
▴ 30
0
votes
0
replies
863
views
CNVtools/snpMatrix
CNVtools
CNVtools
14.5 years ago
Vincent Plagnol
▴ 10
8 results • Page
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Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
MAGeCK is a command line tool that is easy to use. I recommend you use it because a) the logFCs from DESeq2 and MAGeCK will be very similar…
Comment: Get genomic coordinates of CpGs sites (chromosomes, genomic position)
by
Yveto
• 0
Thank for your response. It is Illumina 450 K. I use this code ```{r } library(IlluminaHumanMethylation450kanno.ilmn12.hg19) annotat…
Answer: More regions in union when increasing DBA$config$mergeOverlap
by
Rory Stark
★ 5.2k
I think the documentation is out of sync with the code. Positive values represent gaps between intervals and negative values represent how …
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
Michael Love
41k
But just to be clear, this is not the same as regressing out batch from the VST (approx log transformed): ``` limma::removeBatchEffect(cou…
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
HAK
• 0
Thank you for the explanation, probably my brain just needed to accumulate enough info to understand what you are saying, but I finally got…
Votes
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
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