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Showing :
coefficient
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1
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DEseq2 coefficient
DESeq2
coefficient
9 weeks ago • updated 20 hours ago
JKim
• 0
0
votes
3
replies
569
views
Clustering coefficient of synteny network
Network
syntenet
Clustering
coefficient
10 months ago • updated 9 months ago
Alexandros
• 0
0
votes
1
reply
697
views
Interpretation of coefficient when using "~ grp + grp:ind.n + grp:cnd"
DESeq2
interaction
coefficient
LinearModel
RNASeq
updated 17 months ago by
Michael Love
41k • written 17 months ago by
Pedro Milanez-Almeida
▴ 10
0
votes
8
replies
1.8k
views
DESeq2 coefficient names
resultsNames
DESeq2
coefficient
3.0 years ago
Jane
▴ 10
3
votes
1
reply
1.1k
views
Interpretation of voom limma's intercept coefficient
limma
voom
intercept
coefficient
updated 7.8 years ago by
James W. MacDonald
65k • written 7.8 years ago by
rubi
▴ 110
5 results • Page
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Comment: More regions in union when increasing DBA$config$mergeOverlap
by
Ian D.
▴ 70
Hello. Thanks for the reply. Sorry about this. My testing is telling me that 1 is the default (a gap), not -1 (1bp overlap). Negative …
Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
> I am just re-processing due to being uncertain about how they used the edgeR analysis to reach gene level edgeR devs published something…
Comment: Differences in differential analysis methods for RNA-Seq
by
james.zhang20
• 0
Thanks for the explanations, it has helped clarify some things. Unfortunately, I am working from an early access public dataset (https://do…
Answer: Deseq2 and Normalization of RNA sequencing data
by
ATpoint
★ 4.1k
There is no expectation of normality that is realistic in terms of expression level. Levels are widely different between genes, and counts …
Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
MAGeCK is a command line tool that is easy to use. I recommend you use it because a) the logFCs from DESeq2 and MAGeCK will be very similar…
Votes
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
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