Bioconductor Colon

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colon rstudio golubesets

updated 10.0 years ago by James W. MacDonald 68k • written 10.0 years ago by shramanathakur • 0

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Colon hgu133a2 hgu133plus2 limma inSilicoMerging Colon hgu133a2 hgu133plus2 limma

12.7 years ago Ed Siefker ▴ 230

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Transcription Genetics Pathways Network Survival Cancer Breast Colon Kidney Leukemia HIV

13.3 years ago SSc Array Core ▴ 10

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Sequencing Alignment Cancer Colon bsseq Sequencing Alignment Cancer Colon bsseq

13.5 years ago Kasper Daniel Hansen ★ 6.5k

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Microarray GO Cancer Colon affy limma Microarray GO Cancer Colon affy limma

14.6 years ago James W. MacDonald 68k

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Microarray Cancer Colon limma Microarray Cancer Colon limma

updated 14.6 years ago by James W. MacDonald 68k • written 14.6 years ago by Manuela Di Russo ▴ 70

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819

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Colon Colon

updated 16.0 years ago by James W. MacDonald 68k • written 16.0 years ago by Alberto Goldoni ▴ 420

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SNP Cancer Colon SNP Cancer Colon

16.6 years ago Dmitri Mouradov ▴ 20

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SNP Normalization Cancer Colon PROcess beadarraySNP copynumber SNP Normalization Cancer

16.7 years ago Dmitri Mouradov ▴ 20

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Normalization Cancer Colon Normalization Cancer Colon

updated 18.8 years ago by Jeremy Davis-Turak ▴ 50 • written 18.8 years ago by Jianping Jin ▴ 890

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Microarray Colon limma Microarray Colon limma

updated 21.4 years ago by Gordon Smyth 53k • written 21.4 years ago by Matt McCall ▴ 50

11 results • Page 1 of 1

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Answer: Which preprocessing steps are needed before running limpa? by Gordon Smyth 53k

Please see the example limpa analyses given at <http://github.com/smythlab/limpa>, especially the kidney cancer case study. limpa does not…

Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name by Korneel • 0

Thanks for the quick reply! If I understand correctly, I think if I keep track of the full lineage, I shouldn't have any risk of collapsin…

Comment: Pathway abundance data from Curatedmetagenomics by yesquokkan • 0

Hello, I was also wondering about the same issue. Did you figure it out?

Comment: [DESeq2] Changing dispersion estimates between runs of DESeq2 by colinmccornack • 0

FWIW: This seems to be due to architectural differences between two compute nodes I was running on, specifically with the DESeq2:::fitNbino…

Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name by Erik Wright ▴ 160

This has to do with the fact that some taxonomies reuse names at the same rank level. Common examples in the SILVA taxonomy are "Incertae S…

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Answer: Subsetting data verses contrasts [DESeq2]?

A: WGCNA differences two groups 10 replicates each group

A: WGCNA sample size minimum: why?

Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name

Answer: Can you colour dendrogram branch clusters in pheatmap?

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Popular Question to Peter Hickey ▴ 760