Bioconductor Consensus

Showing : consensus • reset

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blockwiseconsensusModules WGCNA consensus

9 days ago Levi • 0

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593

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Network consensus sampledBlockwiseModules resampling WGCNA

updated 16 months ago by Peter Langfelder ★ 2.8k • written 17 months ago by Caleb Bostwick ▴ 30

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921

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consensus BAM

updated 3.6 years ago by Hervé Pagès 16k • written 3.6 years ago by O. William McClung • 0

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721

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DiffBind consensus

updated 4.0 years ago by Rory Stark ★ 4.9k • written 4.0 years ago by aviv.de-morgan • 0

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951

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SC3 plot consensus marker heatmap

updated 4.5 years ago by Vladimir Kiselev ▴ 150 • written 4.5 years ago by shaktirielland • 0

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793

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wgcna wgcna package consensus

4.7 years ago 2323982403 ▴ 60

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1.4k

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diffbind consensus

6.4 years ago pabla86 • 0

7 results • Page 1 of 1

Recent ...

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Answer: Extract Limma Adjusted Values for Plotting by James W. MacDonald 63k

You should use `removeBatchEffect` for that.

Comment: Interpret plot from DiffBind by Chris • 0

Thank you for the explanation! The purple (**gain**) in the control in the right bottom corner but on the y axis is labeled **loss** which …

Comment: Use with_go along with other filters in getBM function by RuBBiT0 ▴ 10

Thank you! I think that makes much sense to me.

Comment: Interpret plot from DiffBind by Rory Stark ★ 4.9k

Not necessarily. It look to me like there is reconfiguring going on, with some chromatin that was open in the control becoming closed (the …

Comment: Interpret plot from DiffBind by Chris • 0

Thanks Rory! So that means the diseased sample has chromatin more open then the control one, is that correct?

Votes

Answer: NA transcript values in my Txdb

Comment: Interpret plot from DiffBind

Answer: Use with_go along with other filters in getBM function

Answer: Interpret plot from DiffBind

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