Bioconductor Consensus

Showing : consensus • reset

votes

replies

885

views

blockwiseconsensusModules WGCNA consensus

2.7 years ago Levi • 0

votes

2.1k

views

Network consensus sampledBlockwiseModules resampling WGCNA

updated 4.0 years ago by Peter Langfelder ★ 3.0k • written 4.1 years ago by Caleb Bostwick ▴ 30

votes

2.2k

views

consensus BAM

updated 6.3 years ago by Hervé Pagès 16k • written 6.3 years ago by O. William McClung • 0

vote

replies

1.6k

views

DiffBind consensus

updated 6.7 years ago by Rory Stark ★ 5.3k • written 6.7 years ago by aviv.de-morgan • 0

votes

1.9k

views

SC3 plot consensus marker heatmap

updated 7.2 years ago by Vladimir Kiselev ▴ 150 • written 7.2 years ago by shaktirielland • 0

votes

replies

1.6k

views

wgcna wgcna package consensus

7.4 years ago 2323982403 ▴ 60

votes

replies

2.5k

views

diffbind consensus

9.1 years ago pabla86 • 0

7 results • Page 1 of 1

Recent ...

Replies

Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ? by Gordon Smyth 53k

I tend to use dpcCN(), because it more robust than dpc() to experiments with lots of samples and big differences between samples. You coul…

Answer: Which preprocessing steps are needed before running limpa? by Gordon Smyth 53k

Please see the example limpa analyses given at <http://github.com/smythlab/limpa>, especially the kidney cancer case study. limpa does not…

Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name by Korneel • 0

Thanks for the quick reply! If I understand correctly, I think if I keep track of the full lineage, I shouldn't have any risk of collapsin…

Comment: Pathway abundance data from Curatedmetagenomics by yesquokkan • 0

Hello, I was also wondering about the same issue. Did you figure it out?

Comment: [DESeq2] Changing dispersion estimates between runs of DESeq2 by colinmccornack • 0

FWIW: This seems to be due to architectural differences between two compute nodes I was running on, specifically with the DESeq2:::fitNbino…

Votes

Answer: Which preprocessing steps are needed before running limpa?

Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?

Answer: Which preprocessing steps are needed before running limpa?

Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?

Awards • All

Popular Question to Peter Hickey ▴ 760