Showing : SC3 • reset
0
votes
3
replies
2.3k
views
Installing SC3: gfortran error on Mac M1
SC3
2.2 years ago krp • 0
1
vote
4
replies
1.3k
views
number of cell clusters in scRNA-seq
scran scater sc3
updated 4.4 years ago by ★ 28k • written 4.4 years ago by ▴ 670
0
votes
7
replies
1.8k
views
differential expression between clusters (in distinct "treatments") in scRNAseq
scater limma scde scran sc3
4.4 years ago Bogdan ▴ 670
4
votes
5
replies
1.5k
views
Using SC3 with batch corrected MNN values
SC3 Scater Scran scRNA-Seq Batch Correction
updated 4.7 years ago by ▴ 150 • written 4.7 years ago by ▴ 50
0
votes
2
replies
831
views
error running sc3_plot_de_genes in SC3 R package
SC3
updated 4.8 years ago by ▴ 150 • written 4.8 years ago by • 0
0
votes
1
reply
1.1k
views
SC3 how to customize plots ?
SC3 plot consensus marker heatmap
updated 4.9 years ago by ▴ 150 • written 5.0 years ago by • 0
0
votes
2
replies
829
views
Failure to cluster SC3
SC3
updated 5.1 years ago by ▴ 150 • written 5.2 years ago by • 0
1
vote
1
reply
1.0k
views
A question about log_transformed
SC3
updated 5.4 years ago by 64k • written 5.4 years ago by • 0
0
votes
2
replies
784
views
How can I show certain gene's expression in clusters by sc3
sc3
updated 5.5 years ago by ▴ 150 • written 5.5 years ago by • 0
1
vote
1
reply
794
views
Is there a way to pull out the stability index matrix from the SC3 object?
sc3
updated 5.8 years ago by ▴ 150 • written 5.8 years ago by ▴ 10
0
votes
1
reply
1.1k
views
SC3 Package: marker genes and normal genes obtained from featureData
SC3
updated 5.9 years ago by ▴ 150 • written 5.9 years ago by • 0
1
vote
1
reply
1.3k
views
Batch effect removal before SC3?
SC3 batch effect removebatcheffect
updated 6.0 years ago by ▴ 150 • written 6.0 years ago by ▴ 10
1
vote
8
replies
2.0k
views
SC3_estimate_k formatting error?
sc3 scater
updated 6.0 years ago by ▴ 150 • written 6.0 years ago by ▴ 10
5
votes
2
replies
5.4k
views
Raw count data for SC3 and SingleCellExperiment set problem
singlecellexperiment sc3 scater
updated 6.0 years ago by ▴ 150 • written 6.0 years ago by ▴ 10
4
votes
5
replies
1.6k
views
SC3 gene clusters
SC3 single cell single-cell Tutorial
updated 6.1 years ago by 25k • written 6.1 years ago by ▴ 20
1
vote
1
reply
1.3k
views
Does SC3 correct counts for gene length?
sc3 scater single-cell rna-seq biclustering
updated 6.2 years ago by ▴ 150 • written 6.3 years ago by ▴ 20
0
votes
1
reply
3.2k
views
Import .mtx file in R
sc3
updated 6.5 years ago by ▴ 150 • written 6.5 years ago by • 0
4
votes
2
replies
1.3k
views
sc3_plot_expression, colour labels
sc3 single-cell
updated 6.5 years ago by ▴ 150 • written 6.5 years ago by ▴ 20
3
votes
3
replies
1.2k
views
Sharing SC3_interactive results
SC3 single-cell shiny
updated 6.6 years ago by ▴ 150 • written 6.6 years ago by ▴ 20
4
votes
3
replies
1.7k
views
using SC3 and scater for bulk-RNAseq
sc3 scater scRNAseq
updated 6.7 years ago by ▴ 150 • written 6.7 years ago by ★ 1.5k
2
votes
5
replies
1.8k
views
sc3_prepare function error
sc3 scater single-cell single cell
updated 6.8 years ago by ▴ 150 • written 6.8 years ago by ★ 1.5k
3
votes
2
replies
1.2k
views
SC3 tutorial error
SC3
updated 7.0 years ago by ▴ 150 • written 7.0 years ago by ▴ 30
3
votes
1
reply
1.2k
views
SC3 with latent variable corrected counts
SC3 single cell
updated 7.1 years ago by ▴ 150 • written 7.1 years ago by ▴ 10
23 results • Page 1 of 1
Recent ...
Replies
Comment: Result from GSEA for non-model organism not as expected by James W. MacDonald 64k
I asked you in a previous thread to **not add comments to old threads** and instead start a new one. Please follow that advice. It's fine i…
Comment: Problem making orgdb package for bacteria (Pseudomonas) using annotation hub and by James W. MacDonald 64k
This is something you should be able to work out on your own. When you get an error, you have to read it and try to figure out what it mean…
Comment: Subtracting INPUT reads from ChIP read counts. by ann-sophie.gironne • 0
Hi Rory! I'm trying to scale my bigwig files so the visualization on IGV matches what the DiffBind analysis results, being that the sample…
Comment: Ensembl down??? by James W. MacDonald 64k
Yup, they seem to be down. What exactly are you trying to do? There may be other options.
Answer: Result from GSEA for non-model organism not as expected by Aastha Kapoor • 0
I have a similar issue, I have transcriptome data of an inhouse sequenced bacterial genome. I made the database for that bacteria using mak…
Votes
Comment: Ensembl down???
Answer: Limma/DESeq2 for unbalanced nested design (paired samples)
Result from GSEA for non-model organism not as expected
Comment: DESeq2 estimateSizeFactors iterate takes too long
Answer: DESeq2 estimateSizeFactors iterate takes too long
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