Showing : SC3 • reset
0
votes
3
replies
2.9k
views
Installing SC3: gfortran error on Mac M1
SC3
2.9 years ago krp • 0
1
vote
4
replies
1.7k
views
number of cell clusters in scRNA-seq
scran scater sc3
updated 5.2 years ago by ★ 28k • written 5.2 years ago by ▴ 670
0
votes
7
replies
2.4k
views
differential expression between clusters (in distinct "treatments") in scRNAseq
scater limma scde scran sc3
5.2 years ago Bogdan ▴ 670
4
votes
5
replies
2.0k
views
Using SC3 with batch corrected MNN values
SC3 Scater Scran scRNA-Seq Batch Correction
updated 5.4 years ago by ▴ 150 • written 5.4 years ago by ▴ 60
0
votes
2
replies
1.1k
views
error running sc3_plot_de_genes in SC3 R package
SC3
updated 5.6 years ago by ▴ 150 • written 5.6 years ago by • 0
0
votes
1
reply
1.4k
views
SC3 how to customize plots ?
SC3 plot consensus marker heatmap
updated 5.7 years ago by ▴ 150 • written 5.8 years ago by • 0
0
votes
2
replies
1.0k
views
Failure to cluster SC3
SC3
updated 5.9 years ago by ▴ 150 • written 5.9 years ago by • 0
1
vote
1
reply
1.4k
views
A question about log_transformed
SC3
updated 6.2 years ago by 67k • written 6.2 years ago by • 0
0
votes
2
replies
1.0k
views
How can I show certain gene's expression in clusters by sc3
sc3
updated 6.3 years ago by ▴ 150 • written 6.3 years ago by • 0
1
vote
1
reply
987
views
Is there a way to pull out the stability index matrix from the SC3 object?
sc3
updated 6.6 years ago by ▴ 150 • written 6.6 years ago by ▴ 10
0
votes
1
reply
1.3k
views
SC3 Package: marker genes and normal genes obtained from featureData
SC3
updated 6.7 years ago by ▴ 150 • written 6.7 years ago by • 0
1
vote
1
reply
1.6k
views
Batch effect removal before SC3?
SC3 batch effect removebatcheffect
updated 6.7 years ago by ▴ 150 • written 6.8 years ago by ▴ 10
1
vote
8
replies
2.6k
views
SC3_estimate_k formatting error?
sc3 scater
updated 6.8 years ago by ▴ 150 • written 6.8 years ago by ▴ 10
5
votes
2
replies
6.3k
views
Raw count data for SC3 and SingleCellExperiment set problem
singlecellexperiment sc3 scater
updated 6.8 years ago by ▴ 150 • written 6.8 years ago by ▴ 10
4
votes
5
replies
2.0k
views
SC3 gene clusters
SC3 single cell single-cell Tutorial
updated 6.9 years ago by 25k • written 6.9 years ago by ▴ 20
1
vote
1
reply
1.6k
views
Does SC3 correct counts for gene length?
sc3 scater single-cell rna-seq biclustering
updated 7.0 years ago by ▴ 150 • written 7.1 years ago by ▴ 20
0
votes
1
reply
3.5k
views
Import .mtx file in R
sc3
updated 7.2 years ago by ▴ 150 • written 7.2 years ago by • 0
4
votes
2
replies
1.5k
views
sc3_plot_expression, colour labels
sc3 single-cell
updated 7.3 years ago by ▴ 150 • written 7.3 years ago by ▴ 20
3
votes
3
replies
1.5k
views
Sharing SC3_interactive results
SC3 single-cell shiny
updated 7.3 years ago by ▴ 150 • written 7.3 years ago by ▴ 20
4
votes
3
replies
2.0k
views
using SC3 and scater for bulk-RNAseq
sc3 scater scRNAseq
updated 7.5 years ago by ▴ 150 • written 7.5 years ago by ★ 1.5k
2
votes
5
replies
2.0k
views
sc3_prepare function error
sc3 scater single-cell single cell
updated 7.6 years ago by ▴ 150 • written 7.6 years ago by ★ 1.5k
3
votes
2
replies
1.4k
views
SC3 tutorial error
SC3
updated 7.8 years ago by ▴ 150 • written 7.8 years ago by ▴ 30
3
votes
1
reply
1.5k
views
SC3 with latent variable corrected counts
SC3 single cell
updated 7.9 years ago by ▴ 150 • written 7.9 years ago by ▴ 10
23 results • Page 1 of 1
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Comment: SingleR Label.Ont by Stepah • 0
[Aussie Play][1] cares about its Australian players by offering a safe and secure gaming experience where there is never a dull moment. The…
Comment: ensemblVEP deprecation and how to reproduce by Vincent J. Carey, Jr. 6.7k
What aspect of ensemblVEP are you looking for? The vignette https://bioconductor.org/packages/release/bioc/vignettes/VariantAnnotation/in…
Answer: Help with design matrix for RNA-seq data using edgeR by Gordon Smyth 51k
This forum is intended to help with software usage and syntax rather than to answer research questions, and your question is a definitely a…
Answer: [DESeq2] Normalization of External Test Dataset for Machine Learning (ML) Applic by Michael Love 42k
DESeq2 has a way of fixing the reference pseudo-sample used for normalization. In estimateSizeFactors man page, you will see an argument g…
Comment: [DESeq2] Normalization of External Test Dataset for Machine Learning (ML) Applic by Michael Love 42k
Sorry - I requested this to be posted here, I will answer.
Votes
Answer: Help with design matrix for RNA-seq data using edgeR
Answer: Should tSNE from biol. replicates look alike?
Answer: Should tSNE from biol. replicates look alike?
Comment: fgsea stuck in an infinite loop in the middle of the run
Answer: Empty Results from champ.DMP Despite Expected Output
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