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wgcna package
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1
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0
replies
407
views
WGCNA trait order in heat map
wgcna
WGCNA
wgcna package
2.3 years ago
coyoung
▴ 10
0
votes
2
replies
1.3k
views
Module preservation WGCNA
wgcna
wgcna package
modulepreservation
updated 3.5 years ago by
Peter Langfelder
★ 2.6k • written 3.5 years ago by
bekah
▴ 20
0
votes
1
reply
1.2k
views
WGCNA: Matching eigengenes to samples
wgcna
wgcna package
3.5 years ago
Jack
• 0
0
votes
2
replies
582
views
Using Kendall's Tau rank correlation coefficient for creating WGCNA network
wgcna package
wgcna
3.5 years ago
anni.djurhuus
• 0
2
votes
3
replies
753
views
Problem for finding "Locus Link ID" from Annotation file
wgcna package
TCGA
LocusLinkID
genecode
ensembl
updated 3.6 years ago by
James W. MacDonald
59k • written 3.6 years ago by
modarzi
▴ 10
0
votes
2
replies
1.9k
views
TOMplot error: "color" is not a graphical parameter (WGCNA)
wgcna package
software error
updated 3.6 years ago by
Peter Langfelder
★ 2.6k • written 3.6 years ago by
giuseppe0525
• 0
0
votes
0
replies
628
views
consensus module relationship
wgcna
wgcna package
consensus
3.7 years ago
2323982403
▴ 50
2
votes
4
replies
818
views
Segfault error when loading WGCNA
wgcna
wgcna package
3.7 years ago
antoinefelden
▴ 10
1
vote
2
replies
2.5k
views
WGCNA extract genes from a module
WGCNA
wgcna package
updated 3.7 years ago by
Peter Langfelder
★ 2.6k • written 3.7 years ago by
bdy8
• 0
1
vote
3
replies
764
views
SampleNetwork in WGCNA
wgcna
wgcna package
3.8 years ago
2323982403
▴ 50
0
votes
0
replies
1.4k
views
Use of bicor in WGCNA
WGCNA
wgcna package
wgcna
bicor
3.8 years ago
bekah
▴ 20
4
votes
15
replies
6.5k
views
WGCNA: Understanding module-trait correlations
wgcna package
updated 3.8 years ago by
Peter Langfelder
★ 2.6k • written 3.8 years ago by
bekah
▴ 20
0
votes
0
replies
449
views
problem for finding soft power for constructing network in WGCNA algorithm
RNA-seq
WGCNA package
soft power
3.9 years ago
modarzi
▴ 10
13 results • Page
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Comment: performing the differential binding in ChIP-seq
by
Bogdan
▴ 640
I am asking the question because we have two sets of ChIP-seq data for a histone mark (lets' say H3K4me1) that were generated with : <> an…
Comment: performing the differential binding in ChIP-seq
by
Bogdan
▴ 640
Thank you. Yes, DiffBind might be a good choice shall we have replicates per sample. Another choice is MA-norm2. Any other well-tested sug…
Comment: Error using read.ilmn and neqc
by
Gordon Smyth
45k
I edited the title of your question to be more specific.
Answer: Using limma to read Illumina HT-12 v4 data
by
Gordon Smyth
45k
It seems clear that you haven't exported the correct intensity data from GenomeStudio, and I think you recognize that yourself in your ques…
Answer: performing the differential binding in ChIP-seq
by
etiennedanis
• 0
DiffBind https://bioconductor.org/packages/release/bioc/html/DiffBind.html
Votes
Comment: Using vegan::betadisper for determing if I subset my design for DESeq2
Answer: How to best visualize multi-level transcriptomics experiment data?
A: Interpreting results of sample-to-sample PCA/clustering and changing assignment
C: DESeq2 - Differences between plotCounts and normalized counts
C: DESEq2 - Change reference level change "Contrasts" results
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