Bioconductor Wgcna package

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wgcna WGCNA wgcna package

3.9 years ago coyoung ▴ 10

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2.2k

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wgcna wgcna package modulepreservation

updated 5.0 years ago by Peter Langfelder ★ 2.8k • written 5.0 years ago by bekah ▴ 40

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1.8k

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wgcna wgcna package

5.0 years ago Jack • 0

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wgcna package wgcna

5.1 years ago anni.djurhuus • 0

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1.3k

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wgcna package TCGA LocusLinkID genecode ensembl

updated 5.1 years ago by James W. MacDonald 64k • written 5.1 years ago by modarzi ▴ 10

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2.9k

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wgcna package software error

updated 5.2 years ago by Peter Langfelder ★ 2.8k • written 5.2 years ago by giuseppe0525 • 0

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935

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wgcna wgcna package consensus

5.2 years ago 2323982403 ▴ 60

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1.4k

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wgcna wgcna package

5.3 years ago • updated 5.2 years ago antoinefelden ▴ 10

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4.3k

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WGCNA wgcna package

updated 5.3 years ago by Peter Langfelder ★ 2.8k • written 5.3 years ago by bdy8 ▴ 10

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1.2k

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wgcna wgcna package

5.3 years ago 2323982403 ▴ 60

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2.1k

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WGCNA wgcna package wgcna bicor

5.3 years ago bekah ▴ 40

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12k

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wgcna package

updated 5.4 years ago by Peter Langfelder ★ 2.8k • written 5.4 years ago by bekah ▴ 40

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726

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RNA-seq WGCNA package soft power

5.4 years ago modarzi ▴ 10

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Comment: Agilent Microarray Gene Oncology analysis gone wrong by SamGG ▴ 320

Gordon said to let coef to its default value: topTable(fit, n=20)

Comment: Can the limma package be applied to Log2 RUV-normalized data? by Shaimaa Gamal • 0

Hi Gordon, On what basis we can determine whether the dataset is large or not? I am working on a dataset of 515 samples and 5440 genes. I w…

Comment: Agilent Microarray Gene Oncology analysis gone wrong by samagbeyimodupe • 0

Thank you for the quick response. i ran the codes again and removed all the other arguments for eBayes except for fit. I ran the line of co…

Comment: Correct the batch effect in methylation analysis in R by Gordon Smyth 49k

> Is it okay to apply removeBatchEffect before a limma analysis(limma linear model)? No, you should not apply any batch correction before …

Comment: Correct the batch effect in methylation analysis in R by kyj2226 • 0

Thank you for your response Gordon :) I've already run the code below, just add batch to the limma linear model design <- model.matri…

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Comment: Why is DMRcate not available for Bioconductor version 3.18?

Answer: Correct the batch effect in methylation analysis in R

Answer: enrichGOgradient color change

Answer: Filter genes by expression for voomLmFit

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