Bioconductor Wgcna package

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wgcna WGCNA wgcna package

4.2 years ago coyoung ▴ 10

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wgcna wgcna package modulepreservation

updated 5.4 years ago by Peter Langfelder ★ 3.0k • written 5.4 years ago by bekah ▴ 40

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1.9k

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wgcna wgcna package

5.4 years ago Jack • 0

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wgcna package wgcna

5.4 years ago anni.djurhuus • 0

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wgcna package TCGA LocusLinkID genecode ensembl

updated 5.5 years ago by James W. MacDonald 65k • written 5.5 years ago by modarzi ▴ 10

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3.1k

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wgcna package software error

updated 5.5 years ago by Peter Langfelder ★ 3.0k • written 5.5 years ago by giuseppe0525 • 0

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wgcna wgcna package consensus

5.6 years ago 2323982403 ▴ 60

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wgcna wgcna package

5.6 years ago antoinefelden ▴ 10

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4.8k

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WGCNA wgcna package

updated 5.6 years ago by Peter Langfelder ★ 3.0k • written 5.6 years ago by bdy8 ▴ 10

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wgcna wgcna package

5.7 years ago 2323982403 ▴ 60

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2.3k

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WGCNA wgcna package wgcna bicor

5.7 years ago bekah ▴ 40

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14k

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wgcna package

updated 5.7 years ago by Peter Langfelder ★ 3.0k • written 5.7 years ago by bekah ▴ 40

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824

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RNA-seq WGCNA package soft power

5.8 years ago modarzi ▴ 10

13 results • Page 1 of 1

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Comment: Interaction Terms in DESeq2 - Shrinkage by Michael Love 41k

Yes, apeglm requires relevel and nbinomWaldTest to generate the coefficient estimate and its SE. Alternatively you can use ashr with a con…

Comment: A ComBat-seq issue: the covariates are confounded by schlumbohm • 0

Dear ATpoint, thank you for the comment. I did correct the question. For the group, I did accidentally share the input for all three batch…

Comment: Memory errors using read.bismark? by Peter Hickey ▴ 690

If you process serially (i.e. with `BPPARAM = SerialParam()`) then you might be okay. The final object will be on the order of 250 GB in-me…

Answer: blockwiseModule crashes in the end and doesn't generate modules by xaweh28128 • 0

Test your word skills and see if you can crack the code in today's Wordle puzzle. [Nytimes wordle](https://wordlenytimes.net/quordle-game/)…

Comment: Memory errors using read.bismark? by Juan Higareda • 0

Thanks for the answer. Actually, processing one file and keeping it in memory wasn't the problem, is more processing all the 15 files to bu…

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Comment: Not fully paired differential gene expression analysis

Comment: [DiffBind] Obtaining normalization factors

Answer: ComplexHeatmap: add pch to rowAnnotation when the input is a data frame with var

Comment: Not fully paired differential gene expression analysis

Answer: GSVA error

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