Showing : wgcna package • reset
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WGCNA trait order in heat map
wgcna WGCNA wgcna package
2.3 years ago coyoung ▴ 10
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2
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1.3k
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Module preservation WGCNA
wgcna wgcna package modulepreservation
updated 3.5 years ago by ★ 2.6k • written 3.5 years ago by ▴ 20
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1.2k
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WGCNA: Matching eigengenes to samples
wgcna wgcna package
3.5 years ago Jack • 0
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2
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582
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Using Kendall's Tau rank correlation coefficient for creating WGCNA network
wgcna package wgcna
3.5 years ago anni.djurhuus • 0
2
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3
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753
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Problem for finding "Locus Link ID" from Annotation file
wgcna package TCGA LocusLinkID genecode ensembl
updated 3.6 years ago by 59k • written 3.6 years ago by ▴ 10
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2
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1.9k
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TOMplot error: "color" is not a graphical parameter (WGCNA)
wgcna package software error
updated 3.6 years ago by ★ 2.6k • written 3.6 years ago by • 0
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628
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consensus module relationship
wgcna wgcna package consensus
3.7 years ago 2323982403 ▴ 50
2
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4
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818
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Segfault error when loading WGCNA
wgcna wgcna package
3.7 years ago antoinefelden ▴ 10
1
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2
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2.5k
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WGCNA extract genes from a module
WGCNA wgcna package
updated 3.7 years ago by ★ 2.6k • written 3.7 years ago by • 0
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3
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SampleNetwork in WGCNA
wgcna wgcna package
3.8 years ago 2323982403 ▴ 50
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1.4k
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Use of bicor in WGCNA
WGCNA wgcna package wgcna bicor
3.8 years ago bekah ▴ 20
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15
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6.5k
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WGCNA: Understanding module-trait correlations
wgcna package
updated 3.8 years ago by ★ 2.6k • written 3.8 years ago by ▴ 20
0
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0
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problem for finding soft power for constructing network in WGCNA algorithm
RNA-seq WGCNA package soft power
3.9 years ago modarzi ▴ 10
13 results • Page 1 of 1
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Comment: performing the differential binding in ChIP-seq by Bogdan ▴ 640
I am asking the question because we have two sets of ChIP-seq data for a histone mark (lets' say H3K4me1) that were generated with : <> an…
Comment: performing the differential binding in ChIP-seq by Bogdan ▴ 640
Thank you. Yes, DiffBind might be a good choice shall we have replicates per sample. Another choice is MA-norm2. Any other well-tested sug…
Comment: Error using read.ilmn and neqc by Gordon Smyth 45k
I edited the title of your question to be more specific.
Answer: Using limma to read Illumina HT-12 v4 data by Gordon Smyth 45k
It seems clear that you haven't exported the correct intensity data from GenomeStudio, and I think you recognize that yourself in your ques…
Answer: performing the differential binding in ChIP-seq by etiennedanis • 0
DiffBind https://bioconductor.org/packages/release/bioc/html/DiffBind.html
Votes
Comment: Using vegan::betadisper for determing if I subset my design for DESeq2
Answer: How to best visualize multi-level transcriptomics experiment data?
A: Interpreting results of sample-to-sample PCA/clustering and changing assignment
C: DESeq2 - Differences between plotCounts and normalized counts
C: DESEq2 - Change reference level change "Contrasts" results
Awards • All
Popular Question to andrebolerbarros ▴ 10
Scholar to James W. MacDonald 59k
Scholar to Guido Hooiveld ★ 3.2k
Scholar to Kevin Blighe 3.5k
Scholar to SamGG ▴ 270
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