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wgcna package
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1
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0
replies
844
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WGCNA trait order in heat map
wgcna
WGCNA
wgcna package
3.9 years ago
coyoung
▴ 10
0
votes
2
replies
2.2k
views
Module preservation WGCNA
wgcna
wgcna package
modulepreservation
updated 5.0 years ago by
Peter Langfelder
★ 2.8k • written 5.0 years ago by
bekah
▴ 40
0
votes
1
reply
1.8k
views
WGCNA: Matching eigengenes to samples
wgcna
wgcna package
5.0 years ago
Jack
• 0
0
votes
2
replies
1.0k
views
Using Kendall's Tau rank correlation coefficient for creating WGCNA network
wgcna package
wgcna
5.1 years ago
anni.djurhuus
• 0
2
votes
3
replies
1.3k
views
Problem for finding "Locus Link ID" from Annotation file
wgcna package
TCGA
LocusLinkID
genecode
ensembl
updated 5.1 years ago by
James W. MacDonald
64k • written 5.1 years ago by
modarzi
▴ 10
0
votes
2
replies
2.9k
views
TOMplot error: "color" is not a graphical parameter (WGCNA)
wgcna package
software error
updated 5.2 years ago by
Peter Langfelder
★ 2.8k • written 5.2 years ago by
giuseppe0525
• 0
0
votes
0
replies
935
views
consensus module relationship
wgcna
wgcna package
consensus
5.2 years ago
2323982403
▴ 60
2
votes
4
replies
1.4k
views
Segfault error when loading WGCNA
wgcna
wgcna package
5.3 years ago • updated 5.2 years ago
antoinefelden
▴ 10
2
votes
2
replies
4.3k
views
WGCNA extract genes from a module
WGCNA
wgcna package
updated 5.3 years ago by
Peter Langfelder
★ 2.8k • written 5.3 years ago by
bdy8
▴ 10
1
vote
3
replies
1.2k
views
SampleNetwork in WGCNA
wgcna
wgcna package
5.3 years ago
2323982403
▴ 60
0
votes
0
replies
2.1k
views
Use of bicor in WGCNA
WGCNA
wgcna package
wgcna
bicor
5.3 years ago
bekah
▴ 40
8
votes
15
replies
12k
views
WGCNA: Understanding module-trait correlations
wgcna package
updated 5.4 years ago by
Peter Langfelder
★ 2.8k • written 5.4 years ago by
bekah
▴ 40
0
votes
0
replies
726
views
problem for finding soft power for constructing network in WGCNA algorithm
RNA-seq
WGCNA package
soft power
5.4 years ago
modarzi
▴ 10
13 results • Page
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Comment: Agilent Microarray Gene Oncology analysis gone wrong
by
SamGG
▴ 320
Gordon said to let coef to its default value: topTable(fit, n=20)
Comment: Can the limma package be applied to Log2 RUV-normalized data?
by
Shaimaa Gamal
• 0
Hi Gordon, On what basis we can determine whether the dataset is large or not? I am working on a dataset of 515 samples and 5440 genes. I w…
Comment: Agilent Microarray Gene Oncology analysis gone wrong
by
samagbeyimodupe
• 0
Thank you for the quick response. i ran the codes again and removed all the other arguments for eBayes except for fit. I ran the line of co…
Comment: Correct the batch effect in methylation analysis in R
by
Gordon Smyth
49k
> Is it okay to apply removeBatchEffect before a limma analysis(limma linear model)? No, you should not apply any batch correction before …
Comment: Correct the batch effect in methylation analysis in R
by
kyj2226
• 0
Thank you for your response Gordon :) I've already run the code below, just add batch to the limma linear model design <- model.matri…
Votes
Comment: Why is DMRcate not available for Bioconductor version 3.18?
Answer: Correct the batch effect in methylation analysis in R
Answer: enrichGOgradient color change
Answer: Filter genes by expression for voomLmFit
Answer: Filter genes by expression for voomLmFit
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