Showing : cpg • reset
3
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2
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What is the meaning of "CpG interrogation" and "single nucleotide extension(SBE)"?
SBE CpG minfi CpGinterrogation
12 months ago kyj2226 • 0
0
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0
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445
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CpG coverage with MEDIPS
MEDIPS CpG
15 months ago greta • 0
0
votes
4
replies
1.5k
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CpG density in MEDIPS
CpG MEDIPS
6.2 years ago saripalligautam86 ▴ 10
0
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3
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1.6k
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CpG site not annotated with annotatr
annotatr cpg
updated 6.2 years ago by ▴ 140 • written 6.2 years ago by • 0
0
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1
reply
1.6k
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CpG Sites // CG dinucleotides
CpG CpG sites CpG dinucleotides
updated 7.3 years ago by 16k • written 7.3 years ago by • 0
1
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1
reply
6.8k
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How to get the all CpG sites genome postion for hg19
CpG
updated 7.7 years ago by 67k • written 7.7 years ago by • 0
0
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3
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2.4k
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Compute the CpG content for all chromosome like the percentage of G+C
CpG
9.8 years ago Tiphaine Martin ▴ 40
7 results • Page 1 of 1
Recent ...
Replies
Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40
Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …
Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Votes
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
A: Expected counts from RSEM in DESeq2
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