Bioconductor Cpg

Showing : cpg • reset

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463

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SBE CpG minfi CpGinterrogation

4 months ago kyj2226 • 0

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6.0k

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CpG

updated 7.0 years ago by James W. MacDonald 65k • written 7.0 years ago by ericotorrieri • 0

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2.2k

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CpG

9.2 years ago • updated 9.1 years ago Tiphaine Martin ▴ 40

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1.2k

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CpG MEDIPS

5.6 years ago saripalligautam86 ▴ 10

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300

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MEDIPS CpG

7 months ago greta • 0

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1.3k

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annotatr cpg

updated 5.6 years ago by rcavalca ▴ 140 • written 5.6 years ago by soli5 • 0

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1.5k

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CpG CpG sites CpG dinucleotides

updated 6.7 years ago by Hervé Pagès 16k • written 6.7 years ago by ibetfer3 • 0

7 results • Page 1 of 1

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Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k

Oh I see, for the second question, I don't have a great answer. I typically think of one set as the anchor, whose ascertainment is driving …

Comment: Help with running egsea() by James W. MacDonald 65k

Oh, right. Ideally you would use NCBI (aka Entrez gene) IDs because they are way more likely to be unique. Gene symbols are broken down int…

Comment: Help with running egsea() by Chris • 0

Thanks James! I update the question. The last question mean when we use `buildIdx()`, could we use gene symbol instead of entrezID. However…

Comment: Help with running egsea() by James W. MacDonald 65k

I don't understand the last question, but do look at the msigdb.gsets argument to `buildIdx` in the help page for that function.

Answer: Help with running egsea() by James W. MacDonald 65k

There are no arguments to `egsea.base`, as it is meant only as a helper function to return the different methods. In addition, if you are u…

Votes

Comment: Help with running egsea()

Answer: Trim/Filter out-of-bounds GRanges

Comment: Help with running egsea()

Answer: How to save the DEXSeq results

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Scholar to Michael Love 41k

Popular Question to Malcolm Cook ★ 1.6k

Teacher to Gordon Smyth 50k