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cpg
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0
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4
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1.2k
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CpG density in MEDIPS
CpG
MEDIPS
5.6 years ago
saripalligautam86
▴ 10
0
votes
3
replies
1.3k
views
CpG site not annotated with annotatr
annotatr
cpg
updated 5.6 years ago by
rcavalca
▴ 140 • written 5.6 years ago by
soli5
• 0
0
votes
3
replies
2.2k
views
Compute the CpG content for all chromosome like the percentage of G+C
CpG
9.2 years ago • updated 9.1 years ago
Tiphaine Martin
▴ 40
3
votes
2
replies
464
views
What is the meaning of "CpG interrogation" and "single nucleotide extension(SBE)"?
SBE
CpG
minfi
CpGinterrogation
4 months ago
kyj2226
• 0
1
vote
1
reply
6.0k
views
How to get the all CpG sites genome postion for hg19
CpG
updated 7.0 years ago by
James W. MacDonald
65k • written 7.0 years ago by
ericotorrieri
• 0
0
votes
1
reply
1.5k
views
CpG Sites // CG dinucleotides
CpG
CpG sites
CpG dinucleotides
updated 6.7 years ago by
Hervé Pagès
16k • written 6.7 years ago by
ibetfer3
• 0
0
votes
0
replies
300
views
CpG coverage with MEDIPS
MEDIPS
CpG
7 months ago
greta
• 0
7 results • Page
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Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
by
Hervé Pagès
16k
Indeed. Calculations involving floating point arithmetic are architecture-dependent, and testing the results should be done with `all.equal…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
I will follow what you suggested. I didn't use max gap anywhere. I was following statistic I and regarding the size of features, my small…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
Oh I see, for the second question, I don't have a great answer. I typically think of one set as the anchor, whose ascertainment is driving …
Comment: Help with running egsea()
by
James W. MacDonald
65k
Oh, right. Ideally you would use NCBI (aka Entrez gene) IDs because they are way more likely to be unique. Gene symbols are broken down int…
Comment: Help with running egsea()
by
Chris
• 0
Thanks James! I update the question. The last question mean when we use `buildIdx()`, could we use gene symbol instead of entrezID. However…
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Answer: How to save the DEXSeq results
Answer: minfi support of illumina Infinium methylationEPIC v2.0
Comment: minfi support of illumina Infinium methylationEPIC v2.0
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Help with running egsea()
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