Showing : ctc • reset
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ctc::hc2Newick branch length errors?
ctc ctc
12.7 years ago Narayanan, Manikandan NIH/NIAID [E] ▴ 60
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Finding coding SNPs with predictCoding
SNP Annotation BSgenome ctc BSgenome cycle genomes SNP Annotation BSgenome ctc BSgenome
updated 13.7 years ago by ★ 1.7k • written 13.7 years ago by ★ 6.8k
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Finding coding SNPs with predictCoding
SNP ctc SNP ctc
updated 13.8 years ago by ★ 1.7k • written 13.8 years ago by ★ 6.8k
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Query regarding Clustering
Clustering ctc Clustering ctc
updated 15.6 years ago by ▴ 120 • written 15.6 years ago by 21k
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Queries on the 4x44PreProcess Package
Normalization ctc limma Agi4x44PreProcess Normalization ctc limma Agi4x44PreProcess
16.8 years ago Pedro López Romero ▴ 360
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Xcluster
Microarray ctc Microarray ctc
20.4 years ago Antoine Lucas ▴ 100
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:Export 1 way cluster to treeview
Clustering ctc Clustering ctc
21.0 years ago Anthony Bosco ▴ 500
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problems with getBioC() and getBioC(develOK=TRUE) on R 2.0.0
aCGH GO Biobase DynDoc annotate edd genefilter geneplotter rhdf5 multtest ctc ROC affy
21.1 years ago rgentleman ★ 5.5k
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problems with getBioC() and getBioC(develOK=TRUE) on R 2.0.0
aCGH GO Biobase DynDoc annotate edd genefilter geneplotter rhdf5 multtest ctc ROC affy
21.1 years ago Goeman, J.J. MSTAT ▴ 150
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Errors w/ getBioC(develOK =TRUE) with R2.0 devel
aCGH GO Biobase DynDoc annotate edd genefilter geneplotter rhdf5 multtest ctc ROC affy
21.2 years ago Matthew Hannah ▴ 940
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Errors w/ getBioC()
aCGH GO Biobase DynDoc annotate edd genefilter geneplotter rhdf5 multtest ctc ROC affy
21.3 years ago Matthew Hannah ▴ 940
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Updated ctc package available
ctc ctc
22.8 years ago Jeff Gentry ★ 3.9k
12 results • Page 1 of 1
Recent ...
Replies
Comment: upstream git branches of bioc-release by TrentonCollier99 • 0
Thank you very much for taking the time to answer the question. I really appreciate your insights and comments. https://bioc-release.r-univ…
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0
Thank you very much! will take that into consideration
Comment: Large logFC but somewhat high FDR by JKim • 0
Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.
Comment: upstream git branches of bioc-release by Jeroen ▴ 10
OK I have updated https://bioc-release.r-universe.dev accordingly. Let me know if you find version differences when mirroring binaries.
Comment: Large logFC but somewhat high FDR by Gordon Smyth 53k
I don't know what `tp1` is. The relevant histogram would be: ``` hist(fit2$p.value[,"KO_vs_WT"]) ```
Votes
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
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