Showing : ctc • reset
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ctc::hc2Newick branch length errors?
ctc ctc
11.8 years ago Narayanan, Manikandan NIH/NIAID [E] ▴ 60
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Finding coding SNPs with predictCoding
SNP Annotation BSgenome ctc BSgenome cycle genomes SNP Annotation BSgenome ctc BSgenome
updated 12.7 years ago by ★ 1.7k • written 12.7 years ago by ★ 6.8k
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1.6k
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Finding coding SNPs with predictCoding
SNP ctc SNP ctc
updated 12.8 years ago by ★ 1.7k • written 12.8 years ago by ★ 6.8k
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960
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Query regarding Clustering
Clustering ctc Clustering ctc
updated 14.6 years ago by ▴ 120 • written 14.6 years ago by 21k
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Queries on the 4x44PreProcess Package
Normalization ctc limma Agi4x44PreProcess Normalization ctc limma Agi4x44PreProcess
15.9 years ago Pedro López Romero ▴ 360
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Xcluster
Microarray ctc Microarray ctc
19.4 years ago Antoine Lucas ▴ 100
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878
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:Export 1 way cluster to treeview
Clustering ctc Clustering ctc
20.0 years ago Anthony Bosco ▴ 500
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problems with getBioC() and getBioC(develOK=TRUE) on R 2.0.0
aCGH GO Biobase DynDoc annotate edd genefilter geneplotter rhdf5 multtest ctc ROC affy
20.2 years ago rgentleman ★ 5.5k
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problems with getBioC() and getBioC(develOK=TRUE) on R 2.0.0
aCGH GO Biobase DynDoc annotate edd genefilter geneplotter rhdf5 multtest ctc ROC affy
20.2 years ago Goeman, J.J. MSTAT ▴ 150
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Errors w/ getBioC(develOK =TRUE) with R2.0 devel
aCGH GO Biobase DynDoc annotate edd genefilter geneplotter rhdf5 multtest ctc ROC affy
20.3 years ago Matthew Hannah ▴ 940
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Errors w/ getBioC()
aCGH GO Biobase DynDoc annotate edd genefilter geneplotter rhdf5 multtest ctc ROC affy
20.3 years ago Matthew Hannah ▴ 940
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Updated ctc package available
ctc ctc
21.9 years ago Jeff Gentry ★ 3.9k
12 results • Page 1 of 1
Recent ...
Replies
Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0
Thanks for your reply!
Votes
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
A: Expected counts from RSEM in DESeq2
A: Using RSEM reads for DESeq2
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Scholar to James W. MacDonald 67k
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