Showing : ctc • reset
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ctc::hc2Newick branch length errors?
ctc ctc
12.6 years ago Narayanan, Manikandan NIH/NIAID [E] ▴ 60
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2
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1.5k
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Finding coding SNPs with predictCoding
SNP Annotation BSgenome ctc BSgenome cycle genomes SNP Annotation BSgenome ctc BSgenome
updated 13.6 years ago by ★ 1.7k • written 13.6 years ago by ★ 6.8k
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5
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1.8k
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Finding coding SNPs with predictCoding
SNP ctc SNP ctc
updated 13.7 years ago by ★ 1.7k • written 13.7 years ago by ★ 6.8k
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1
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1.1k
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Query regarding Clustering
Clustering ctc Clustering ctc
updated 15.5 years ago by ▴ 120 • written 15.5 years ago by 21k
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1.2k
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Queries on the 4x44PreProcess Package
Normalization ctc limma Agi4x44PreProcess Normalization ctc limma Agi4x44PreProcess
16.7 years ago Pedro López Romero ▴ 360
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1.4k
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Xcluster
Microarray ctc Microarray ctc
20.3 years ago Antoine Lucas ▴ 100
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980
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:Export 1 way cluster to treeview
Clustering ctc Clustering ctc
20.9 years ago Anthony Bosco ▴ 500
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1.3k
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problems with getBioC() and getBioC(develOK=TRUE) on R 2.0.0
aCGH GO Biobase DynDoc annotate edd genefilter geneplotter rhdf5 multtest ctc ROC affy
21.1 years ago rgentleman ★ 5.5k
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1.4k
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problems with getBioC() and getBioC(develOK=TRUE) on R 2.0.0
aCGH GO Biobase DynDoc annotate edd genefilter geneplotter rhdf5 multtest ctc ROC affy
21.1 years ago Goeman, J.J. MSTAT ▴ 150
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1.4k
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Errors w/ getBioC(develOK =TRUE) with R2.0 devel
aCGH GO Biobase DynDoc annotate edd genefilter geneplotter rhdf5 multtest ctc ROC affy
21.2 years ago Matthew Hannah ▴ 940
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1.3k
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Errors w/ getBioC()
aCGH GO Biobase DynDoc annotate edd genefilter geneplotter rhdf5 multtest ctc ROC affy
21.2 years ago Matthew Hannah ▴ 940
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Updated ctc package available
ctc ctc
22.7 years ago Jeff Gentry ★ 3.9k
12 results • Page 1 of 1
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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112
Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
we can investigate this issue. thank you for bringing it to our attention
Comment: deseq2 filter the low counts by Michael Love 43k
> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…
Comment: deseq2 filter the low counts by empty_mt • 0
Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …
Comment: deseq2 filter the low counts by Michael Love 43k
Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering
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Bioconductor 3.22 Released!
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
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