Showing : ctc • reset
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ctc::hc2Newick branch length errors?
ctc ctc
12.5 years ago Narayanan, Manikandan NIH/NIAID [E] ▴ 60
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2
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Finding coding SNPs with predictCoding
SNP Annotation BSgenome ctc BSgenome cycle genomes SNP Annotation BSgenome ctc BSgenome
updated 13.4 years ago by ★ 1.7k • written 13.4 years ago by ★ 6.8k
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5
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1.8k
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Finding coding SNPs with predictCoding
SNP ctc SNP ctc
updated 13.5 years ago by ★ 1.7k • written 13.5 years ago by ★ 6.8k
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Query regarding Clustering
Clustering ctc Clustering ctc
updated 15.3 years ago by ▴ 120 • written 15.3 years ago by 21k
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Queries on the 4x44PreProcess Package
Normalization ctc limma Agi4x44PreProcess Normalization ctc limma Agi4x44PreProcess
16.6 years ago Pedro López Romero ▴ 360
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Xcluster
Microarray ctc Microarray ctc
20.1 years ago Antoine Lucas ▴ 100
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:Export 1 way cluster to treeview
Clustering ctc Clustering ctc
20.7 years ago Anthony Bosco ▴ 500
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problems with getBioC() and getBioC(develOK=TRUE) on R 2.0.0
aCGH GO Biobase DynDoc annotate edd genefilter geneplotter rhdf5 multtest ctc ROC affy
20.9 years ago rgentleman ★ 5.5k
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problems with getBioC() and getBioC(develOK=TRUE) on R 2.0.0
aCGH GO Biobase DynDoc annotate edd genefilter geneplotter rhdf5 multtest ctc ROC affy
20.9 years ago Goeman, J.J. MSTAT ▴ 150
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Errors w/ getBioC(develOK =TRUE) with R2.0 devel
aCGH GO Biobase DynDoc annotate edd genefilter geneplotter rhdf5 multtest ctc ROC affy
21.0 years ago Matthew Hannah ▴ 940
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Errors w/ getBioC()
aCGH GO Biobase DynDoc annotate edd genefilter geneplotter rhdf5 multtest ctc ROC affy
21.0 years ago Matthew Hannah ▴ 940
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Updated ctc package available
ctc ctc
22.6 years ago Jeff Gentry ★ 3.9k
12 results • Page 1 of 1
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Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by snijesh ▴ 200
I would like to clarify whether the command `res <- results(dds, name = "phaseLP.conditionTreated")` is the correct approach to generate …
Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by James W. MacDonald 68k
Not sure I understand. You ask how to do something and then show how one would do so.
Comment: DiffBind getting Fold values of near 0 by littlefishes20 ▴ 10
Same issues. All peaks return to a fold near 0, although they are significant when visualizing in IGV. Please find the MAplot and volcanoPl…
Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by snijesh ▴ 200
I have checked DEGs between Solvent Control (SC) of FP and LP and there are noticebale differences in terms of DEGs. ``` # Checking SC in …
Answer: A0A287BB68 not recognized as UNPROT key in org.Ss.eg.db using AnnotationDbi::sel by James W. MacDonald 68k
Apparently it's been over-ridden by a different UniProtKB ID ``` > select(org.Ss.eg.db, "MYH11", "UNIPROT", "SYMBOL") 'select()' retu…
Votes
How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?
Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi
Can NanoString data be analyzed using DESeq2?
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