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customCDF
•
reset
7
votes
6
replies
5.6k
views
How to use brainarray custom cdf with oligo package?
oligo
customcdf
HTA
frma
updated 8.7 years ago by
James W. MacDonald
65k • written 8.7 years ago by
sanj
▴ 20
1
vote
10
replies
5.2k
views
How to use brainarray custom cdf with any bioconductor package?
affy
oligo
customcdf
9.4 years ago • updated 9.1 years ago
rishi.dasroy
▴ 20
5
votes
4
replies
3.3k
views
How to use custom cdf "hgu133plus2hsentrezgcdf"?
customcdf
affymetrix microarrays
hgu133plus2
affy
6.4 years ago
rahil
▴ 30
0
votes
5
replies
2.5k
views
Load CDF files for Affymetrix ST 2.0 microarrays
microarray
oligo
cdf
customcdf
updated 8.5 years ago by
Guido Hooiveld
★ 4.0k • written 8.5 years ago by
Nathaniel
▴ 20
0
votes
7
replies
2.5k
views
How to use brainarray custom cdf for HTA platform?
hta
customcdf
updated 7.3 years ago by
James W. MacDonald
65k • written 7.3 years ago by
pbachali
▴ 50
0
votes
0
replies
1.9k
views
Appropriate implementation of ComBat function for known batch effect correction and alternative methodologies of merging microarray datasets
sva
ComBat
customcdf
affymetrix microarrays
limma
8.3 years ago
svlachavas
▴ 830
3
votes
7
replies
1.7k
views
Oligo: cannot fit robust Probe Level linear Models / fitPLM when using a custom CDF
oligo
pdinfobuilder
pd.mogene.1.1.st
customcdf
updated 7.6 years ago by
James W. MacDonald
65k • written 8.1 years ago by
Guido Hooiveld
★ 4.0k
2
votes
1
reply
1.6k
views
BrainArray Custom CDFs and oligo
oligo
brainarray
rma
customcdf
updated 7.3 years ago by
James W. MacDonald
65k • written 7.3 years ago by
lcordeiro
• 0
0
votes
3
replies
1.3k
views
justRMA and wrong customCDFs causing segfault
justrma
customCDF
segfault
updated 5.3 years ago by
Daniel
▴ 10 • written 8.5 years ago by
maria.lehtivaara
• 0
0
votes
2
replies
1.1k
views
Fixing brainarray repository link for mac os x
Annotation
GO
CustomCDF
cdf
gcrma
Annotation
GO
CustomCDF
cdf
gcrma
updated 14.4 years ago by
James W. MacDonald
65k • written 14.4 years ago by
Yair Benita
▴ 80
0
votes
3
replies
964
views
Custom cdf and Ensemble
customcdf
R
microarray
updated 7.3 years ago by
James W. MacDonald
65k • written 7.3 years ago by
12021560-002
• 0
2
votes
3
replies
920
views
Using gcrma() and using the t-test to compare single genes of interest for disease vs healthy comparison?
gcrma
CustomCDF
Affyhgu133aExpr
limma
affy
updated 13 months ago by
James W. MacDonald
65k • written 13 months ago by
Pratik Mehta
▴ 10
0
votes
1
reply
852
views
Annotations of custom cdf files
customcdf
updated 7.3 years ago by
James W. MacDonald
65k • written 7.3 years ago by
12021560-002
• 0
13 results • Page
1 of 1
Recent ...
Replies
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
JKim
• 0
The 1st model has an interaction term, but the 2nd model doesn't have the interaction term. That makes the difference.
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
swbarnes2
★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Comment: DESeq2- Mysterious interaction suppresses DEGs
by
shaunpeterson
• 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
Comment: STRINGdb : error with string_db$plot_network()
by
damian.szk
▴ 80
ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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