Bioconductor Cydar

Showing : cydar • reset

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cydar

updated 4.7 years ago by Aaron Lun ★ 28k • written 4.7 years ago by thkapell ▴ 10

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Cydar CyTOF normalization

updated 5.2 years ago by Aaron Lun ★ 28k • written 5.3 years ago by ghogg • 0

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1.3k

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cydar mass cytometry

updated 5.5 years ago by Aaron Lun ★ 28k • written 5.5 years ago by kenneth.baker • 0

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1.8k

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Cydar normalization normalizeBatch

updated 5.7 years ago by Aaron Lun ★ 28k • written 5.7 years ago by Florent ▴ 10

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1.1k

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cydar CyTOF

updated 5.8 years ago by Aaron Lun ★ 28k • written 5.8 years ago by mikhael.manurung ▴ 280

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968

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cydar

7.4 years ago Lukas Weber • 0

6 results • Page 1 of 1

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Answer: nightmare to make custom txdb for genomes from ToxoDB by James W. MacDonald 67k

Your post title is misleading. You have no problem whatsoever generating the `TxDb`, the problem is using it with `gDNAx`, which attempts t…

Answer: Normalizing batch effects using technical replicates for DGE analysis between tw by Gordon Smyth 52k

Just fit a model `~condition + experiment` where `condition` has three levels A, B and C. Ideally, use limma and include duplicate correlat…

Comment: Error in get_anno_data(ontology) : ontology not supported yet... by GODseeker • 0

thank u so much ,god bless u,my dear friend.

Comment: Feature Counts - potential bug with outfile.jcounts by chris2.a.white • 0

Hi @gordonsmyth and @weishi, Firstly, thank you for offering your time to develop the junction quantification module further. This is gre…

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0

Hi Tim, Thanks for your reply! Yes, my data is 450K, and it is TCGA methylation data downloaded by TCGAbiolinks. The problem is that I can …

Votes

A: Advice on correcting for batch effect using DESeq2

Comment: Feature Counts - potential bug with outfile.jcounts

Answer: Feature Counts - potential bug with outfile.jcounts

Comment: Can we get beta values with DMRcate package

Answer: Can we get beta values with DMRcate package

Awards • All

Popular Question to martin.grigorov ▴ 10

Scholar to James W. MacDonald 67k