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cydar
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Comparison of cydar to other Bioconductor packages for flow cytometry analysis
cydar
updated 5.9 years ago by
Aaron Lun
★ 29k • written 5.9 years ago by
thkapell
▴ 10
1
vote
6
replies
2.6k
views
Re: Cydar. Can I Normalize CyTOF data with just one FCS file/batch and if so, which normalization mode is recommended?
Cydar
CyTOF
normalization
updated 6.4 years ago by
Aaron Lun
★ 29k • written 6.4 years ago by
ghogg
• 0
0
votes
4
replies
1.7k
views
Using output from normalizeBatch() outside of cydar package
cydar
mass cytometry
updated 6.7 years ago by
Aaron Lun
★ 29k • written 6.7 years ago by
kenneth.baker
• 0
2
votes
8
replies
2.3k
views
Cydar normalizeBatch specifying batches
Cydar
normalization
normalizeBatch
updated 6.9 years ago by
Aaron Lun
★ 29k • written 6.9 years ago by
Florent
▴ 10
2
votes
4
replies
1.6k
views
Cydar's countCells tolerance parameter for arcsinh-transformed data
cydar
CyTOF
updated 7.0 years ago by
Aaron Lun
★ 29k • written 7.0 years ago by
mikhael.manurung
▴ 280
1
vote
2
replies
1.4k
views
cydar: negative values for cell assignment indices
cydar
8.6 years ago
Lukas Weber
• 0
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Comment: Question on processing compound protein groups in limpa
by
JKim
• 0
Many thanks. I appreciate your advice.
Answer: Question on processing compound protein groups in limpa
by
Gordon Smyth
53k
Different people have different ways of dealing with compound protein groups. You could just leave them in the analysis, in which case limp…
Answer: Correct usage of limpa for protein input
by
Gordon Smyth
53k
limpa can work on protein-level quantifications, but they must be intensity-based and must be on the log scale. From what I read (<https://…
Comment: A problem occurs when running the monocle2
by
a2a2hset32aa
• 0
Troubleshooting monocle2 errors in R 4.5.1 often points to package incompatibilities, particularly with newer versions of igraph. For resea…
Comment: Deadline Extended: EuroBioC2026 Call for Abstracts
by
a2a2hset32aa
• 0
Attending EuroBioC2026 is an excellent way for researchers to explore the intersection of technology and biology. For those seeking high qu…
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Answer: Question on processing compound protein groups in limpa
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
A: Interpretaion of dendrogram height in WGCNA?
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