Bioconductor Cydar

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Cydar normalization normalizeBatch

updated 5.1 years ago by Aaron Lun ★ 28k • written 5.1 years ago by Florent ▴ 10

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Cydar CyTOF normalization

updated 4.7 years ago by Aaron Lun ★ 28k • written 4.7 years ago by ghogg • 0

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cydar CyTOF

updated 5.2 years ago by Aaron Lun ★ 28k • written 5.2 years ago by mikhael.manurung ▴ 270

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cydar mass cytometry

updated 4.9 years ago by Aaron Lun ★ 28k • written 4.9 years ago by kenneth.baker • 0

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cydar

6.9 years ago Lukas Weber • 0

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cydar

updated 4.1 years ago by Aaron Lun ★ 28k • written 4.1 years ago by thkapell ▴ 10

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Comment: Ensembl plants at annotationHub? by Johannes Rainer ★ 2.0k

You can get the `EnsDb` EnsDb.Taestivum.v112.sqlite (for Ensembl 112/ ensemblgenomes 59) [here](https://www.dropbox.com/sh/msic0luivbldmb7/…

Comment: Errors in chromosome annotation-biomaRt by blackwidowzzz • 0

I recommend using a different dataset specific to your rat genome assembly version 8. You can search for available datasets within Ensembl …

Answer: Errors in chromosome annotation-biomaRt by James W. MacDonald 66k

If you are just using HGNC symbols for the lookup, and you are trying to get NCBI IDs, then I wouldn't use `biomaRt` because it's based on …

Comment: Help with ENmix readidat by James W. MacDonald 66k

Please don't add to posts from two years ago. Instead make a new post. Also, please read the help page for `readidat`. The only reason to …

Comment: LRT, more than two conditions and pairwise comparisons by James W. MacDonald 66k

In that case, probably easiest to subset to the groups being compared.

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how to control age and gender effect in expression data using DESeq2

Answer: Error retrieving ensembl gene id using biomaRt...

Comment: LRT, more than two conditions and pairwise comparisons

Answer: Control group between 2 batches have different expression in RNAseq data

Answer: How to remove batch effect to combine RNAseq data from 2 different experiments?

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Popular Question to mohammedtoufiq91 ▴ 10