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RNA-Seq analysis with DESeq2: showing two conditions do *not* significantly differ
deseq2 RNA-Seq uniform distribution data visualization
updated 5.6 years ago by ★ 13k • written 5.6 years ago by ▴ 20
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how to construct mds plot of differentially expressed genes?
differentially expressed genes mds plot data visualization
6.5 years ago pratikshasharma47 • 0
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Job: Summer Vacation Studentships in Data Science, MRC Cancer Unit, University of Cambridge, UK
data science data visualization machine learning cancer Job
7.5 years ago • updated 7.4 years ago Shamith.Samarajiwa ▴ 180
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Visualize FlowSet by Date
FlowSet data visualization cellcounts
8.3 years ago Maria • 0
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1
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DNA Deferential metheylation
data visualization
8.8 years ago tarek_2050 • 0
1
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1
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2.3k
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Using pathview with uncommon species leads to Errors
pathview Kegg rnaseq data visualization
updated 9.2 years ago by ★ 1.6k • written 9.2 years ago by • 0
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1
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Pathview: visualization of data
pathview data visualization
updated 9.6 years ago by ★ 1.6k • written 9.6 years ago by ★ 4.1k
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Input file of NGS data for Pathview
rnaseq pathview data visualization
updated 10.0 years ago by ★ 1.6k • written 10.0 years ago by ▴ 10
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Job: Multiple postdoctoral fellowships are available immediately in the Gehlenborg Lab in the Department of Biomedical Informatics at Harvard Medical Scho…
bioinformatics bioinformatician job data visualization Job
10.0 years ago Doe, Aimee ▴ 40
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Deseq2 rlog or 'regular' normalization?
Deseq2 rlog transformation data visualization
10.1 years ago sunil.mangalam • 0
10 results • Page 1 of 1
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Comment: gene Set with high AUC score but no cells assigned to cell type by eja.hdrer33ge.r.m • 0
Understanding complex data results like those from AUCell can be challenging. For easier analysis and better data management on the go you …
Comment: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames by ubjw24 • 0
Thank you for your replies. I got the problem solved by installing mutSignature with this line: ``` devtools::install_github("dami82/mutS…
Comment: DESeq2 design for haplotype MPRA by Rita • 0
Thank you very much, I appreciate it!
Answer: DESeq2 design for haplotype MPRA by Michael Love 43k
> My goal is to identify which non-reference haplotypes are differentially active compared to the corresponding ref/ref haplotype within ea…
Answer: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames by James W. MacDonald 68k
It seems fine on devel as well. ``` > BSgenome.Hsapiens.UCSC.hg38 | BSgenome object for Human | - organism: Homo sapiens | - provide…
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Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
Answer: DESeq2 design for haplotype MPRA
A: Different logFC (log2foldchange) values for genes from limma-voom and other too
Comment: Check removeBatchEffect effectiveness
Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)
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