Showing : data visualization • reset
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RNA-Seq analysis with DESeq2: showing two conditions do *not* significantly differ
deseq2 RNA-Seq uniform distribution data visualization
updated 5.7 years ago by ★ 13k • written 5.7 years ago by ▴ 20
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714
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how to construct mds plot of differentially expressed genes?
differentially expressed genes mds plot data visualization
6.6 years ago pratikshasharma47 • 0
1
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0
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1.4k
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Job: Summer Vacation Studentships in Data Science, MRC Cancer Unit, University of Cambridge, UK
data science data visualization machine learning cancer Job
7.6 years ago • updated 7.4 years ago Shamith.Samarajiwa ▴ 180
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0
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1.1k
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Visualize FlowSet by Date
FlowSet data visualization cellcounts
8.4 years ago Maria • 0
0
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1
reply
836
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DNA Deferential metheylation
data visualization
8.9 years ago tarek_2050 • 0
1
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1
reply
2.3k
views
Using pathview with uncommon species leads to Errors
pathview Kegg rnaseq data visualization
updated 9.3 years ago by ★ 1.6k • written 9.3 years ago by • 0
0
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1
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2.5k
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Pathview: visualization of data
pathview data visualization
updated 9.7 years ago by ★ 1.6k • written 9.7 years ago by ★ 4.1k
0
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1
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2.9k
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Input file of NGS data for Pathview
rnaseq pathview data visualization
updated 10.0 years ago by ★ 1.6k • written 10.0 years ago by ▴ 10
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1.9k
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Job: Multiple postdoctoral fellowships are available immediately in the Gehlenborg Lab in the Department of Biomedical Informatics at Harvard Medical Scho…
bioinformatics bioinformatician job data visualization Job
10.1 years ago Doe, Aimee ▴ 40
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12
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13k
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Deseq2 rlog or 'regular' normalization?
Deseq2 rlog transformation data visualization
10.1 years ago sunil.mangalam • 0
10 results • Page 1 of 1
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Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
Hi, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to filtering ap…
Answer: gene Set with high AUC score but no cells assigned to cell type by Kevin Blighe ★ 4.0k
Hi, You have correctly identified the issue: AUCell's automatic threshold selection is conservative by design, aiming for specificity to…
Answer: featureCounts -L: high unassigned:mapq fraction by Kevin Blighe ★ 4.0k
Hi Katarzyna, The discrepancy arises because your samtools stats were restricted to genic regions only, where alignments are typically o…
Answer: Streamlining the computing time for MiloDE p-value correction in large dataset? by Kevin Blighe ★ 4.0k
Hi Joseph, I agree with ATpoint's suggestion that pseudobulk aggregation (e.g., via aggregateData in scran or similar) would likely be far…
Votes
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Suppress warning in RHDF5 write
Answer: Suppress warning in RHDF5 write
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