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Deseq2 rlog or 'regular' normalization?
Deseq2 rlog transformation data visualization
8.6 years ago sunil.mangalam • 0
4
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3
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RNA-Seq analysis with DESeq2: showing two conditions do *not* significantly differ
deseq2 RNA-Seq uniform distribution data visualization
updated 4.1 years ago by ★ 13k • written 4.1 years ago by ▴ 20
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Pathview: visualization of data
pathview data visualization
updated 8.2 years ago by ★ 1.6k • written 8.2 years ago by ★ 3.9k
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Using pathview with uncommon species leads to Errors
pathview Kegg rnaseq data visualization
updated 7.8 years ago by ★ 1.6k • written 7.8 years ago by • 0
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Input file of NGS data for Pathview
rnaseq pathview data visualization
updated 8.5 years ago by ★ 1.6k • written 8.5 years ago by ▴ 10
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DNA Deferential metheylation
data visualization
7.4 years ago tarek_2050 • 0
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Visualize FlowSet by Date
FlowSet data visualization cellcounts
6.9 years ago Maria • 0
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Job: Summer Vacation Studentships in Data Science, MRC Cancer Unit, University of Cambridge, UK
data science data visualization machine learning cancer Job
6.0 years ago • updated 5.9 years ago Shamith.Samarajiwa ▴ 180
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how to construct mds plot of differentially expressed genes?
differentially expressed genes mds plot data visualization
5.1 years ago pratikshasharma47 • 0
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Job: Multiple postdoctoral fellowships are available immediately in the Gehlenborg Lab in the Department of Biomedical Informatics at Harvard Medical Scho…
bioinformatics bioinformatician job data visualization Job
8.5 years ago Doe, Aimee ▴ 40
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Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa by Michael Love 41k
Sorry, for questions about statistical analysis plan and interpretation of results, I recommend to work with a local statistician or someon…
Answer: Fold change calculation in Diffbind vs. DESEQ2? by Michael Love 41k
There was a recent DiffBind question on the support site that noticed the same thing, try searching recent DiffBind posts.
Answer: Timecourse RNASeq analysis by Michael Love 41k
There are many choices for time course, and we have an example in our workflow (rnaseqGene). Otherwise, I recommend to consult a local …
Answer: Padj "NA" with thousands of low count although the raw read counts are quite lar by Michael Love 41k
You can either turn off independent filtering in `results` or use `ihw` see the vignette.
Comment: Why p value inconsistent when using different number of pathway score? by Chris • 0
Thanks Gordon for a detail guide! You have a great memory of time. GSVA also do differential express at pathway level (https://bioconductor…
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Comment: Why p value inconsistent when using different number of pathway score?
Nominations for Bioconductor Awards 2024!
Answer: Improving the design matrices vignette in RNAseq123
Answer: Perform gene set enrichment analysis using fgsea on two conditions that don't ha
Answer: Perform gene set enrichment analysis using fgsea on two conditions that don't ha
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