Bioconductor Dba.report

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dba.report DiffBind

written 11 months ago by jandrade • 0

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1.1k

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bflip dba.report DiffBind

2.8 years ago • updated 2.7 years ago Riba Michela ▴ 90

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598

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diffbind dba.count dba.report

updated 4.6 years ago by Rory Stark ★ 5.2k • written 4.6 years ago by chadnewton • 0

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diffbind dba.report filtering

6.5 years ago • updated 6.4 years ago konstantopoulos • 0

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768

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diffbind dba.report

updated 6.8 years ago by Rory Stark ★ 5.2k • written 6.8 years ago by wesley.cai • 0

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985

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dba.report DiffBind

updated 9.4 years ago by Martin Morgan 25k • written 9.4 years ago by Silvia • 0

6 results • Page 1 of 1

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Answer: More regions in union when increasing DBA$config$mergeOverlap by Rory Stark ★ 5.2k

I think the documentation is out of sync with the code. Positive values represent gaps between intervals and negative values represent how …

Comment: log2FoldChange value is way too different when compared with counts(dds) by Michael Love 41k

But just to be clear, this is not the same as regressing out batch from the VST (approx log transformed): ``` limma::removeBatchEffect(cou…

Comment: log2FoldChange value is way too different when compared with counts(dds) by HAK • 0

Thank you for the explanation, probably my brain just needed to accumulate enough info to understand what you are saying, but I finally got…

Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call by ATpoint ★ 4.1k

Here the error probably means that you habe genes where expression scross all samples is the same. Rowscaling is value minus mean divided b…

Comment: Store output of matchPWM() by James W. MacDonald 65k

Here's a self contained reproducible example, using part of the example in `?matchPWM` ``` > library(Biostrings) > data(HNF4alpha) > libr…

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Answer: DEseq2 coefficient

SPIA plotP giving error

Answer: Fold change calculation in Diffbind vs. DESEQ2?

C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB

C: Extremely big genes in annotation TxDb packages

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Scholar to Rory Stark ★ 5.2k

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