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Replies
Answer: Get gene symbols for a set of hg19 coordinates
by
ATpoint
★
4.1k
Simply download a GTF file (for example from GENCODE) matching the current genome and/or annotation version you are using in your project a…
Comment: Not able to install any Bioconductor 3.18 package [unable to access index]
by
ATpoint
★
4.1k
Try the mirror suggestion for now: https://support.bioconductor.org/p/9153734/#9153755
Comment: unable to access bioconductor packages - qvalue installation failed...
by
ATpoint
★
4.1k
Seems to be a general problem at the moment, can reproduce. The the mirror suggestion here: https://support.bioconductor.org/p/9153734/#915…
Comment: Running ENmix with mouse methylation manifest: readidat error - Error in readman
by
Karosham.Reddy
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0
Thank you for the suggestion the ENmix version is using is ENmix_1.38.01.
I tried your suggested code, R identified the idat files but sti…
Comment: pathview error
by
Guido Hooiveld
★
4.0k
> Will removing the NA values help solve the problem?
Did you try?
And, FWIW, in the cases I had ensembl-based RNA-seq datasets I removed…
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