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dese
•
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0
votes
2
replies
855
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DESeq2 ratio of ratios and p-value
DESeq2
dese
2.5 years ago
wilfried.guiblet
• 0
2
votes
17
replies
1.7k
views
lfcshrink error DESeq2
DESeq2
lfcshrink
DESe
updated 11 months ago by
Michael Love
41k • written 11 months ago by
Alina
• 0
2
votes
3
replies
990
views
Single sided P-value for DESeq2 Likelihood Ratio Test
DESeq2
DESe
updated 3.2 years ago by
Michael Love
41k • written 3.2 years ago by
glennli
• 0
0
votes
2
replies
627
views
where the gene is overexpressed and down regulated while doing DESeq2 analysis
DESe
DESeq2
updated 2.6 years ago by
Michael Love
41k • written 2.6 years ago by
Dinesh
• 0
1
vote
3
replies
1.4k
views
ERROR: unable to find an inherited method for function ‘dispersions<-’ for signature ‘"DESeqDataSet",
DESeq2
dese
2.3 years ago
aedavids
▴ 20
0
votes
1
reply
168
views
collapseReplicates dimension error
DESeq2
Dese
updated 5 weeks ago by
Michael Love
41k • written 5 weeks ago by
Léa
• 0
0
votes
5
replies
3.4k
views
Error in DESeqDataSet(se, design = design, ignoreRank) : all variables in design formula must be columns in colData
DESE
DESeq2
updated 24 months ago by
Basti
▴ 780 • written 24 months ago by
Maryam.sed1400
• 0
0
votes
2
replies
959
views
Handling NA's in Deseq2
Dese
DESeq2
11 months ago
Asger Mølgaard
• 0
0
votes
5
replies
810
views
DESeq2 analysis
DESe
DESeq2
9 months ago
Adèle
• 0
3
votes
3
replies
931
views
Merging two plated in R
dese
DESeq2
updated 23 months ago by
James W. MacDonald
65k • written 23 months ago by
lmrogers34
▴ 10
0
votes
2
replies
260
views
Cross-species analysis using DESeq2 - size factor computation
dese
DESeq2
3 months ago
pl23
• 0
4
votes
4
replies
1.1k
views
Adding cell population estimates as a covariate in DESeq2 differential gene expression analysis
DESeq2
Dese
DifferentialRegulation
differe
updated 7 weeks ago by
feather-W
• 0 • written 13 months ago by
Bernardo
▴ 10
0
votes
2
replies
403
views
Linear Model Fitting and Colinearity
dese
DESeq2
4 months ago
Hugo
• 0
0
votes
2
replies
767
views
Effect of within-group variation on gene expression analysis
DESeq2
updated 3.4 years ago by
Michael Love
41k • written 3.4 years ago by
hpapoli
• 0
0
votes
2
replies
254
views
DESeq2 Results in Different Pvalue & Log2FC using the same code and data
DESeq2
dese
updated 11 weeks ago by
ATpoint
★ 4.1k • written 11 weeks ago by
Xu
• 0
15 results • Page
1 of 1
Recent ...
Replies
Comment: Once again a "Model matrix not full rank"
by
arfranco
▴ 130
But.. How to run a temporal assay?
Comment: Deseq2 and Normalization of RNA sequencing data
by
kcarey
• 0
Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …
Answer: NEED FOR NESSASORY HELP
by
Gordon Smyth
50k
Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…
Answer: Gene-by-sample covariates in limma
by
Gordon Smyth
50k
Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
by
Gordon Smyth
50k
You have discovered something that I have pointed out many times on this forum. fgsea does not implement the classic GSEA method published …
Votes
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
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