Showing : dese • reset
2
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17
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1.7k
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lfcshrink error DESeq2
DESeq2 lfcshrink DESe
updated 11 months ago by 41k • written 11 months ago by • 0
0
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5
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810
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DESeq2 analysis
DESe DESeq2
9 months ago Adèle • 0
0
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5
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3.4k
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Error in DESeqDataSet(se, design = design, ignoreRank) : all variables in design formula must be columns in colData
DESE DESeq2
updated 24 months ago by ▴ 780 • written 24 months ago by • 0
4
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4
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1.1k
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Adding cell population estimates as a covariate in DESeq2 differential gene expression analysis
DESeq2 Dese DifferentialRegulation differe
updated 6 weeks ago by • 0 • written 13 months ago by ▴ 10
3
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3
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931
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Merging two plated in R
dese DESeq2
updated 23 months ago by 65k • written 23 months ago by ▴ 10
2
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3
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990
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Single sided P-value for DESeq2 Likelihood Ratio Test
DESeq2 DESe
updated 3.2 years ago by 41k • written 3.2 years ago by • 0
1
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3
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1.4k
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ERROR: unable to find an inherited method for function ‘dispersions<-’ for signature ‘"DESeqDataSet",
DESeq2 dese
2.3 years ago aedavids ▴ 20
0
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2
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254
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DESeq2 Results in Different Pvalue & Log2FC using the same code and data
DESeq2 dese
updated 11 weeks ago by ★ 4.1k • written 11 weeks ago by • 0
0
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2
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627
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where the gene is overexpressed and down regulated while doing DESeq2 analysis
DESe DESeq2
updated 2.6 years ago by 41k • written 2.6 years ago by • 0
0
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2
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958
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Handling NA's in Deseq2
Dese DESeq2
11 months ago Asger Mølgaard • 0
0
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2
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855
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DESeq2 ratio of ratios and p-value
DESeq2 dese
2.5 years ago wilfried.guiblet • 0
0
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2
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260
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Cross-species analysis using DESeq2 - size factor computation
dese DESeq2
3 months ago pl23 • 0
0
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2
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767
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Effect of within-group variation on gene expression analysis
DESeq2
updated 3.4 years ago by 41k • written 3.4 years ago by • 0
0
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2
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403
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Linear Model Fitting and Colinearity
dese DESeq2
4 months ago Hugo • 0
0
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1
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168
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collapseReplicates dimension error
DESeq2 Dese
updated 5 weeks ago by 41k • written 5 weeks ago by • 0
15 results • Page 1 of 1
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Replies
Comment: Once again a "Model matrix not full rank" by arfranco ▴ 130
But.. How to run a temporal assay?
Comment: Deseq2 and Normalization of RNA sequencing data by kcarey • 0
Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …
Answer: NEED FOR NESSASORY HELP by Gordon Smyth 50k
Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…
Answer: Gene-by-sample covariates in limma by Gordon Smyth 50k
Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p- by Gordon Smyth 50k
You have discovered something that I have pointed out many times on this forum. fgsea does not implement the classic GSEA method published …
Votes
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
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