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deseq2
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8
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Slightly different count plots from R and spreadsheet
DESeq2
ggplot2
20 hours ago • updated 12 hours ago
boczniak767
▴ 720
1
vote
3
replies
135
views
LRT, more than two conditions and pairwise comparisons
DESeq2
updated 2 days ago by
James W. MacDonald
66k • written 3 days ago by
boczniak767
▴ 720
2
votes
4
replies
214
views
DESeq2- Mysterious interaction suppresses DEGs
DESeq2
PCAplot
RNA-Seq
DesignModel
updated 2 days ago by
Michael Love
42k • written 5 days ago by
shaunpeterson
• 0
0
votes
6
replies
594
views
Numerical differences in DESeq2 output depending on different design matrix construction
DESeq2
6 days ago • updated 2 days ago
Ken C
• 0
4
votes
9
replies
307
views
Can DESeq2 rlog normalized matrix reflects time course result directly?
DESeq2
timecoursedata
GeneExpression
updated 6 days ago by
ATpoint
★ 4.1k • written 8 days ago by
pangtaihin
• 0
1
vote
2
replies
269
views
How can I create a eigencorplot of pca created from deseq2 object with PCAtools
DESeq2
eigencorplot
PCAtools
9 days ago • updated 6 days ago
BioinfGuru
▴ 30
6 results • Page
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Comment: Not able to install any Bioconductor 3.18 package [unable to access index]
by
mgdrnl
• 0
I solved the problem installing the latest R version (4.4.0)
Answer: Get gene symbols for a set of hg19 coordinates
by
ATpoint
★ 4.1k
Simply download a GTF file (for example from GENCODE) matching the current genome and/or annotation version you are using in your project a…
Comment: Not able to install any Bioconductor 3.18 package [unable to access index]
by
ATpoint
★ 4.1k
Try the mirror suggestion for now: https://support.bioconductor.org/p/9153734/#9153755
Comment: unable to access bioconductor packages - qvalue installation failed...
by
ATpoint
★ 4.1k
Seems to be a general problem at the moment, can reproduce. The the mirror suggestion here: https://support.bioconductor.org/p/9153734/#915…
Comment: Running ENmix with mouse methylation manifest: readidat error - Error in readman
by
Karosham.Reddy
• 0
Thank you for the suggestion the ENmix version is using is ENmix_1.38.01. I tried your suggested code, R identified the idat files but sti…
Votes
Comment: recount3 problem downloading data from source sra
Not able to install any Bioconductor 3.18 package [unable to access index]
unable to access bioconductor packages - qvalue installation failed...
Not able to install any Bioconductor 3.18 package [unable to access index]
can't open mghp.osn.xsede.org
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