Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
design formula
•
reset
8
votes
3
replies
5.3k
views
Understanding interaction term in DESeq2
deseq2
design formula
log fold change
4.0 years ago
jason.taotaotan
▴ 40
0
votes
2
replies
1.1k
views
Design of time-course experiment in DESeq2
deseq2
design
design formula
time course
lrt
updated 4.5 years ago by
Michael Love
42k • written 4.5 years ago by
ac_bioinformatics
• 0
1
vote
2
replies
924
views
Time series experiment analysis in DEseq2 without T=0 and three independent experiments with linked samples
deseq2
rnaseq
repeated measures
time series
design formula
updated 4.5 years ago by
Michael Love
42k • written 4.5 years ago by
Dorien
▴ 10
0
votes
2
replies
825
views
Differential Expression Analysis on a Subset Derived from a Previous Contrast in edgeR or DESeq2
deseq2
design formula
design matrix
edgeR
ATAC
updated 4.6 years ago by
Gordon Smyth
51k • written 4.6 years ago by
corinne_hutfilz
• 0
0
votes
2
replies
697
views
DESeq2 design formula
deseq2
design formula
updated 4.5 years ago by
swbarnes2
★ 1.4k • written 4.5 years ago by
tracecakes
• 0
5 results • Page
1 of 1
Recent ...
Replies
Comment: 'path' must be string
by
James W. MacDonald
66k
Yes. We already knew that from the error message, and I told you that in my previous email. The point wasn't to figure out *where* the err…
Comment: 'path' must be string
by
cpierce2
• 0
I ran the debugger and this is the line that causes the error: ``` if (any(startsWith(pkcData[["RTS_ID"]][1L], "RTS")) & any(startsWith(pr…
Comment: Generating surrogate variables across multiple variables of interest
by
Robert
• 0
Yes, we have several biomarkers, and a proteomic set, so we are characterizing each biomarker by it's proteomic association(s). The use for…
Comment: Error running tximeta
by
Guido Hooiveld
★ 4.0k
FYI (since I just finalized a run with `salmon`). For each sample (`.`) an output folder is created that contains 3 files (`cmd_info.json`…
Comment: Error running tximeta
by
Michael Love
42k
Tximeta uses the full directory. There are files that give the key information about the transcriptome. It's not a good idea to selectively…
Votes
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
Answer: Understanding how to contrast two treatments in DESeq2
Answer: Understanding how to contrast two treatments in DESeq2
Cannot extract TxFeatures for a defined GRanges object
Limma time series spline help
Awards
• All
Popular Question
to
Lluís Revilla Sancho
▴ 730
Popular Question
to
maltethodberg
▴ 180
Scholar
to
Michael Love
42k
Popular Question
to
Leonardo Collado Torres
★ 1.1k
Scholar
to
Gordon Smyth
51k
Locations
• All
France,
16 minutes ago
Ann Arbor,
44 minutes ago
San Diego,
54 minutes ago
United States,
1 hour ago
United States,
1 hour ago
Traffic: 744 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6