Bioconductor Designmatrix

Showing : designmatrix • reset

votes

replies

1.4k

views

DESeq2 limma modelmatrix edgeR designmatrix

updated 2.5 years ago by Gordon Smyth 50k • written 2.6 years ago by rebecca.lea.johnston • 0

votes

replies

1.3k

views

limma microarray designmatrix

updated 7.8 years ago by Aaron Lun ★ 28k • written 7.8 years ago by nashchem • 0

votes

replies

1.2k

views

R designmatrix edgeR limma model.matrix

16 months ago Abdul ▴ 20

votes

replies

1.1k

views

Limma designMatrix

updated 5.8 years ago by Aaron Lun ★ 28k • written 5.8 years ago by Keifa ▴ 10

votes

replies

1.1k

views

designmatrix deseq2 DESeq2

updated 2.5 years ago by swbarnes2 ★ 1.3k • written 2.5 years ago by OST • 0

vote

replies

1.1k

views

designmatrix RNA-seq limma

updated 3.1 years ago by Gordon Smyth 50k • written 3.1 years ago by athief ▴ 20

votes

replies

1.0k

views

DESeq2 designmatrix edgeR limma tidybulk

updated 15 months ago by Michael Love 41k • written 15 months ago by aditya.m ▴ 10

votes

replies

937

views

MutlipleFactors DesignMatrix edgeR

3.2 years ago Debayan ▴ 20

votes

replies

891

views

edgeR pairedsamples designmatrix

3.2 years ago sfidemw • 0

votes

replies

849

views

edger r differentialanalysis rnaseq designmatrix

updated 5.0 years ago by Aaron Lun ★ 28k • written 5.0 years ago by Beginner ▴ 60

votes

replies

682

views

deseq2 miRNASeq designmatrix Batch

updated 4.1 years ago by Michael Love 41k • written 4.1 years ago by anshulmbi • 0

vote

replies

618

views

designmatrix DifferentialExpression edgeR RNAseq

3.2 years ago nageshprabhu.k ▴ 10

votes

replies

164

views

subsettingdata edgeR designmatrix

updated 12 days ago by Gordon Smyth 50k • written 12 days ago by prity6459 • 0

votes

155

views

limma designmatrix

updated 25 days ago by Gordon Smyth 50k • written 25 days ago by avery • 0

14 results • Page 1 of 1

Recent ...

Replies

Answer: log2FoldChange value is way too different when compared with counts(dds) by Michael Love 41k

This has been asked before, but with a multi factor design, the LFC for coefficient X adjust for the others, in a way that is often hard to…

Answer: Get genomic coordinates of CpGs sites (chromosomes, genomic position) by James W. MacDonald 65k

You don't say what array that is, so I will guess. ``` > library(IlluminaHumanMethylationEPICanno.ilm10b4.hg19) > Locations DataFrame…

Answer: SGSeq: moving toward diffex from SGSeq analysis by Leonard Goldstein ▴ 200

`vid` and `eid` are unique identifiers for splice variants and splicing events respectively. They are analogous to exon bin and gene identi…

Comment: Help with error using camera() in limma by Chris • 0

Thanks James! I fixed the error. I try gene symbol instead of entrez and it worked.

Comment: limma for gene expression analysis with big and unbalanced sample size by XW • 0

Could you explain more about the comment "there are no problems with using limma for unbalanced data sets" ? thanks.

Votes

SPIA plotP giving error

Answer: Fold change calculation in Diffbind vs. DESEQ2?

C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB

C: Extremely big genes in annotation TxDb packages

Make custom Txdb class objects from Txdb

Awards • All