Bioconductor Designmatrix

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752

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DESeq2 designmatrix edgeR limma tidybulk

updated 10 months ago by Michael Love 41k • written 10 months ago by aditya.m ▴ 10

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900

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R designmatrix edgeR limma model.matrix

11 months ago Abdul ▴ 20

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1.2k

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DESeq2 limma modelmatrix edgeR designmatrix

updated 2.1 years ago by Gordon Smyth 48k • written 2.2 years ago by rebecca.lea.johnston • 0

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927

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designmatrix deseq2 DESeq2

updated 2.1 years ago by swbarnes2 ★ 1.3k • written 2.1 years ago by OST • 0

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934

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designmatrix RNA-seq limma

updated 2.7 years ago by Gordon Smyth 48k • written 2.7 years ago by athief ▴ 20

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521

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designmatrix DifferentialExpression edgeR RNAseq

2.8 years ago nageshprabhu.k ▴ 10

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791

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MutlipleFactors DesignMatrix edgeR

2.8 years ago Debayan ▴ 20

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746

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edgeR pairedsamples designmatrix

2.8 years ago sfidemw • 0

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567

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deseq2 miRNASeq designmatrix Batch

updated 3.7 years ago by Michael Love 41k • written 3.7 years ago by anshulmbi • 0

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737

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edger r differentialanalysis rnaseq designmatrix

updated 4.6 years ago by Aaron Lun ★ 28k • written 4.6 years ago by Beginner ▴ 50

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990

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Limma designMatrix

updated 5.4 years ago by Aaron Lun ★ 28k • written 5.4 years ago by Keifa ▴ 10

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1.1k

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limma microarray designmatrix

updated 7.4 years ago by Aaron Lun ★ 28k • written 7.4 years ago by nashchem • 0

12 results • Page 1 of 1

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Comment: NCBI protein conversion to CDNA and NCBI gene (in R) by Gordon Smyth 48k

Continuation of https://support.bioconductor.org/p/9155428/

Comment: Why is DMRcate not available for Bioconductor version 3.18? by Tim Peters ▴ 150

Thanks Daniel, Gordon and Lori for flagging this. DSS is only needed for the vignette so I'll remove that section, plus the dependency, som…

Comment: NCBI protein to NCBI cDNA (Ensembl conversions would be great as well) in R by R_Page • 0

Thank you, this works well. As for CDNA, I figured out what I need to find, and have made a new post regarding it.

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

Hello Michael, I am continuing here and need your expert answer on this again I have performed small rna loci and DNA methylation mappin…

Comment: GOslim missing GO term by amanda • 0

Thank you for the advice and many thanks! It is WGCNA analysis. I will try your method today and see if there are some consistencies.

Votes

Answer: Differential gene expression analysis

Comment: Why is DMRcate not available for Bioconductor version 3.18?

Why is DMRcate not available for Bioconductor version 3.18?

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