Bioconductor Designmatrix

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DESeq2 Designmatrix limma

updated 11 weeks ago by James W. MacDonald 67k • written 11 weeks ago by Neha • 0

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432

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subsettingdata edgeR designmatrix

updated 4 months ago by Gordon Smyth 51k • written 4 months ago by prity6459 • 0

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302

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limma designmatrix

updated 5 months ago by Gordon Smyth 51k • written 5 months ago by avery • 0

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1.2k

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DESeq2 designmatrix edgeR limma tidybulk

updated 19 months ago by Michael Love 42k • written 19 months ago by aditya.m ▴ 10

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1.4k

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R designmatrix edgeR limma model.matrix

21 months ago Abdul ▴ 20

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1.6k

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DESeq2 limma modelmatrix edgeR designmatrix

updated 2.9 years ago by Gordon Smyth 51k • written 2.9 years ago by rebecca.lea.johnston • 0

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1.3k

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designmatrix deseq2 DESeq2

updated 2.9 years ago by swbarnes2 ★ 1.4k • written 2.9 years ago by OST • 0

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1.2k

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designmatrix RNA-seq limma

updated 3.4 years ago by Gordon Smyth 51k • written 3.5 years ago by athief ▴ 20

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741

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designmatrix DifferentialExpression edgeR RNAseq

3.6 years ago nageshprabhu.k ▴ 10

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1.1k

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MutlipleFactors DesignMatrix edgeR

3.6 years ago Debayan ▴ 20

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1.1k

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edgeR pairedsamples designmatrix

3.6 years ago sfidemw • 0

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818

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deseq2 miRNASeq designmatrix Batch

updated 4.5 years ago by Michael Love 42k • written 4.5 years ago by anshulmbi • 0

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961

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edger r differentialanalysis rnaseq designmatrix

updated 5.4 years ago by Aaron Lun ★ 28k • written 5.4 years ago by Beginner ▴ 60

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1.3k

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Limma designMatrix

updated 6.2 years ago by Aaron Lun ★ 28k • written 6.2 years ago by Keifa ▴ 10

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1.4k

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limma microarray designmatrix

updated 8.1 years ago by Aaron Lun ★ 28k • written 8.1 years ago by nashchem • 0

15 results • Page 1 of 1

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Comment: ı cant install clusterprofiler on my Ubuntu 20.04.6 LTS by semra • 0

``` >BiocManager::install(version = "3.19", lib = "~/R/x86_64-pc-linux-gnu-library/4.4") 'getOption("repos")' replaces Bioconductor standar…

Comment: [DESeq2] time series strain-specific differences over time by Michael Love 42k

I will say it is possible but a bit cumbersome to perform an LRT for 60 vs 0. You would have to re-run `DESeq()` or minimally `nbinomLRT` w…

Comment: [DESeq2] time series strain-specific differences over time by Michael Love 42k

Correct: https://www.bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#i-ran-a-likelihood-ratio-test-but-results…

Comment: concentration tables suitable as input for new packages? by katja.danielzik • 0

Thank you for your reply! "Spectra" indeed is another example for software processing MS-data to p.e. concentration tables. My package howe…

Comment: AffylmGUI does not start wit R 4.4.1 by richardallenfriedmanbrooklyn ▴ 20

Gordon, Thank you as always. I have tried the instructions you gave before my most recent post. The patch is almost certainly beyond my ca…

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C: [DESeq2] time series strain-specific differences over time

Comment: [DESeq2] time series strain-specific differences over time

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