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Gordon Smyth
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updated 28 days ago by
Gordon Smyth
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written 28 days ago by
avery
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updated 15 months ago by
Michael Love
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written 15 months ago by
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17 months ago
Abdul
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updated 2.5 years ago by
Gordon Smyth
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written 2.6 years ago by
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updated 3.1 years ago by
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athief
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updated 4.1 years ago by
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written 4.1 years ago by
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Recent ...
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Answer: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
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0
Hi Michael,
I think there is something wrong with the generation of nullranges. I was working with small RNA and methylation overlaps. …
Answer: Once again a "Model matrix not full rank"
by
swbarnes2
★
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Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
Gordon Smyth
50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
James W. MacDonald
65k
This part:
```
design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa)
colnames(design_intercept) <- c("AltSHP_LA","Al…
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