Bioconductor DesignMatrix

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subsettingdata edgeR designmatrix

updated 7 days ago by Gordon Smyth 50k • written 8 days ago by prity6459 • 0

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148

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limma designmatrix

updated 20 days ago by Gordon Smyth 50k • written 20 days ago by avery • 0

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1.0k

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DESeq2 designmatrix edgeR limma tidybulk

updated 15 months ago by Michael Love 41k • written 15 months ago by aditya.m ▴ 10

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1.2k

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R designmatrix edgeR limma model.matrix

16 months ago Abdul ▴ 20

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DESeq2 limma modelmatrix edgeR designmatrix

updated 2.5 years ago by Gordon Smyth 50k • written 2.6 years ago by rebecca.lea.johnston • 0

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1.1k

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designmatrix deseq2 DESeq2

updated 2.5 years ago by swbarnes2 ★ 1.3k • written 2.5 years ago by OST • 0

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designmatrix RNA-seq limma

updated 3.1 years ago by Gordon Smyth 50k • written 3.1 years ago by athief ▴ 20

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616

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designmatrix DifferentialExpression edgeR RNAseq

3.2 years ago nageshprabhu.k ▴ 10

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936

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MutlipleFactors DesignMatrix edgeR

3.2 years ago Debayan ▴ 20

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888

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edgeR pairedsamples designmatrix

3.2 years ago sfidemw • 0

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679

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deseq2 miRNASeq designmatrix Batch

updated 4.1 years ago by Michael Love 41k • written 4.1 years ago by anshulmbi • 0

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843

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edger r differentialanalysis rnaseq designmatrix

updated 5.0 years ago by Aaron Lun ★ 28k • written 5.0 years ago by Beginner ▴ 60

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1.1k

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Limma designMatrix

updated 5.8 years ago by Aaron Lun ★ 28k • written 5.8 years ago by Keifa ▴ 10

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1.3k

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limma microarray designmatrix

updated 7.8 years ago by Aaron Lun ★ 28k • written 7.8 years ago by nashchem • 0

14 results • Page 1 of 1

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Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0

Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …

Answer: PCA plot suggestions by Michael Love 41k

For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10

Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…

Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k

Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…

Answer: ATACseq merge peaks by ATpoint ★ 4.0k

That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…

Votes

Answer: Math expression in shapeCustom legend in EnhancedVolcano

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length