Bioconductor Devel

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Deprecation devel Bioconductor Devel

10 months ago • updated 8 days ago shepherl 3.8k

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Release Devel ExperimentData Software

8 weeks ago • updated 2 days ago shepherl 3.8k

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Release Devel release devel

updated 6 months ago by Guido Hooiveld ★ 3.9k • written 6 months ago by shepherl 3.8k

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Devel

updated 6 months ago by shepherl 3.8k • written 7 months ago by Richard • 0

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Bioconductor Deprecation Devel devel

12 months ago • updated 10 months ago shepherl 3.8k

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Devel PackageType deve

11 months ago • updated 10 months ago Franck RICHARD • 0

6 results • Page 1 of 1

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Comment: Deseq2. decontXcounts not integers. Useful alternative? by ATpoint ★ 4.0k

I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…

Answer: Improving the design matrices vignette in RNAseq123 by Gordon Smyth 50k

Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0

Thank you for your comment! I'll review my code from top to bottom.

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;

Votes

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

biomaRt error: database disk image is malformed

Comment: biomaRt : No lock file for BiocFileCache

Answer: Cross-species analysis - how to compute the mid parent value?

Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0